Os12g0182900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0182900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.61 | 0.406 | 10.1 | -1.51 | 1.24 | -2.67 | 1.55 | -1.27 | -0.15 | 4.28 | 28.22 | 11 | -- | -- |
| 76.51 | 0.411 | 10.1 | -1.71 | 1.21 | -2.6 | 1.12 | -- | -0.187 | 4.33 | 28.33 | 12 | -- | -- |
| 79.62 | 0.419 | 10.1 | -1.63 | 1.2 | -2.6 | -- | -0.498 | -0.18 | 4.29 | 27.93 | 11 | -- | -- |
| 79.59 | 0.418 | 10.1 | -1.71 | 1.21 | -2.59 | -- | -- | -0.192 | 4.29 | 28.19 | 2 | -- | -- |
| 127.71 | 0.529 | 10.1 | -1.43 | -- | -2.15 | -- | -0.875 | 0.0376 | -- | 24.32 | 4 | -- | -- |
| 173.63 | 0.618 | 10 | -1.11 | 0.688 | -- | 0.83 | -- | 0.353 | 6.94 | -- | -- | -- | -- |
| 175.4 | 0.62 | 10 | -1.09 | 0.689 | -- | -- | -- | 0.351 | 7.04 | -- | -- | -- | -- |
| 128.82 | 0.531 | 10.1 | -1.54 | -- | -2.06 | -- | -- | -0.00267 | -- | 24.57 | 2 | -- | -- |
| 149.64 | 0.573 | 10.1 | -- | 1 | -1.91 | -- | -- | 0.124 | 4.78 | 28.19 | 2 | -- | -- |
| 200.41 | 0.662 | 10 | -1.08 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 206.96 | 0.673 | 9.97 | -- | 0.678 | -- | -- | -- | 0.473 | 7.15 | -- | -- | -- | -- |
| 186.86 | 0.639 | 10 | -- | -- | -1.53 | -- | -- | 0.224 | -- | 25.1 | 2 | -- | -- |
| 231.22 | 0.71 | 9.99 | -- | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 3 | 75.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 76.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 76.72 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 6 | 77.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 11 | 77.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 12 | 77.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 15 | 78.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 78.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 23 | 80.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 80.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 28 | 81.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 29 | 81.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 32 | 81.70 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 53 | 81.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 57 | 81.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 66 | 81.88 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 118 | 82.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 119 | 82.05 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 122 | 82.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 126 | 82.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 196 | 82.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 207 | 82.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 275 | 82.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 348 | 82.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 352 | 82.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 419 | 82.76 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 448 | 82.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 462 | 82.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 482 | 82.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 503 | 82.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 505 | 82.94 | temperature | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 853 | 83.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 875 | 83.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 879 | 83.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 899 | 84.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 14 |
| 906 | 84.05 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 927 | 84.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 935 | 84.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |