Os12g0182600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0182600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.42 | 0.347 | 9 | -0.949 | 0.288 | -0.293 | -0.188 | 1.56 | -0.207 | 3.65 | 19.1 | 1658 | -- | -- |
| 57.17 | 0.352 | 8.99 | -0.824 | 0.302 | -0.528 | 0.0172 | -- | -0.201 | 3.83 | 18.5 | 3168 | -- | -- |
| 54.52 | 0.344 | 9 | -0.946 | 0.287 | -0.29 | -- | 1.57 | -0.206 | 3.65 | 19.05 | 1640 | -- | -- |
| 55.68 | 0.348 | 8.96 | -0.829 | 0.283 | -0.71 | -- | -- | -0.179 | 3.4 | 17 | 4717 | -- | -- |
| 58.92 | 0.358 | 9 | -0.936 | -- | -0.304 | -- | 1.5 | -0.198 | -- | 19.15 | 1389 | -- | -- |
| 62.34 | 0.37 | 8.94 | -0.568 | 0.287 | -- | -0.183 | -- | -0.0796 | 3.84 | -- | -- | -- | -- |
| 62.44 | 0.37 | 8.94 | -0.566 | 0.286 | -- | -- | -- | -0.0786 | 3.81 | -- | -- | -- | -- |
| 59.8 | 0.36 | 8.97 | -0.879 | -- | -0.779 | -- | -- | -0.172 | -- | 16.97 | 4733 | -- | -- |
| 70.09 | 0.39 | 8.93 | -- | 0.266 | -0.259 | -- | -- | -0.0328 | 3.82 | 17.2 | 3037 | -- | -- |
| 66.95 | 0.382 | 8.94 | -0.554 | -- | -- | -- | -- | -0.071 | -- | -- | -- | -- | -- |
| 70.87 | 0.394 | 8.93 | -- | 0.275 | -- | -- | -- | -0.0156 | 3.83 | -- | -- | -- | -- |
| 73.9 | 0.4 | 8.93 | -- | -- | -0.331 | -- | -- | -0.0303 | -- | 17.3 | 2588 | -- | -- |
| 75.03 | 0.404 | 8.93 | -- | -- | -- | -- | -- | -0.00953 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 3 | 50.84 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 4 | 50.87 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 5 | 50.94 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 7 | 50.99 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 8 | 51.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 15 | 51.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 17 | 51.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 22 | 51.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 32 | 51.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 33 | 51.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 18 |
| 44 | 51.14 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 62 | 51.20 | humidity | 90 | 14400 | > th | dose dependent | sin | 23 | NA |
| 67 | 51.22 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 78 | 51.25 | humidity | 90 | 14400 | > th | dose independent | sin | 18 | NA |
| 94 | 51.29 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 97 | 51.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 104 | 51.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 107 | 51.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 170 | 51.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 180 | 51.42 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 199 | 51.44 | humidity | 90 | 14400 | < th | dose independent | sin | 20 | NA |
| 211 | 51.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 217 | 51.46 | temperature | 25 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 223 | 51.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 242 | 51.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 343 | 51.66 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 356 | 51.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 384 | 51.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 385 | 51.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 390 | 51.72 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 391 | 51.72 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 401 | 51.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 414 | 51.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 443 | 51.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 459 | 51.79 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 463 | 51.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 469 | 51.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 470 | 51.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 480 | 51.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 496 | 51.81 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 508 | 51.82 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 523 | 51.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 536 | 51.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 537 | 51.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 546 | 51.84 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 548 | 51.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 586 | 51.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 596 | 51.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 621 | 51.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 670 | 51.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 675 | 51.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 702 | 51.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 721 | 51.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 723 | 51.97 | temperature | 20 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 747 | 51.99 | wind | 9 | 43200 | < th | dose independent | sin | 6 | NA |
| 759 | 51.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 761 | 51.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 785 | 52.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 788 | 52.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 802 | 52.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 823 | 52.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 847 | 52.04 | temperature | 20 | 14400 | > th | dose independent | sin | 18 | NA |
| 865 | 52.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 905 | 52.07 | wind | 9 | 43200 | > th | dose independent | sin | 6 | NA |
| 914 | 52.07 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 920 | 52.07 | temperature | 25 | 14400 | < th | dose dependent | sin | 21 | NA |
| 924 | 52.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 926 | 52.08 | temperature | 20 | 14400 | < th | dose independent | sin | 18 | NA |
| 943 | 52.08 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 946 | 52.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 969 | 52.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 979 | 52.10 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 980 | 52.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 991 | 52.11 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 12 |