Os12g0182300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0182300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.22 | 0.458 | 10.2 | 2.09 | 0.639 | 0.153 | 0.418 | 2.78 | 0.697 | 22 | 999 | 5152 | -- | -- |
| 96.75 | 0.458 | 10.3 | 1.88 | 0.615 | 0.718 | 0.5 | -- | 0.682 | 22.3 | 1004 | 13056 | -- | -- |
| 94.04 | 0.452 | 10.2 | 2.06 | 0.662 | 0.0999 | -- | 3.37 | 0.684 | 22 | 998.7 | 11095 | -- | -- |
| 95.97 | 0.456 | 10.3 | 1.94 | 0.662 | 0.895 | -- | -- | 0.785 | 22 | 1004 | 12986 | -- | -- |
| 115.7 | 0.501 | 10.2 | 2.23 | -- | 0.523 | -- | 2.67 | 0.85 | -- | 1004 | 12576 | -- | -- |
| 110.44 | 0.493 | 10.3 | 2.08 | 0.643 | -- | 0.418 | -- | 0.66 | 22 | -- | -- | -- | -- |
| 111.08 | 0.494 | 10.3 | 2.06 | 0.644 | -- | -- | -- | 0.66 | 21.8 | -- | -- | -- | -- |
| 121.4 | 0.513 | 10.2 | 1.94 | -- | 0.883 | -- | -- | 0.731 | -- | 1004 | 13837 | -- | -- |
| 162.28 | 0.593 | 10.2 | -- | 0.674 | 1.77 | -- | -- | 0.683 | 21.9 | 1004 | 42768 | -- | -- |
| 135.85 | 0.545 | 10.3 | 2.07 | -- | -- | -- | -- | 0.66 | -- | -- | -- | -- | -- |
| 222.92 | 0.698 | 10.3 | -- | 0.651 | -- | -- | -- | 0.431 | 22.1 | -- | -- | -- | -- |
| 163.06 | 0.595 | 10.4 | -- | -- | 1.47 | -- | -- | 0.0441 | -- | 1013 | 47520 | -- | -- |
| 248.53 | 0.736 | 10.3 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.04 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 4 | 87.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 5 | 87.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 12 | 87.21 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 38 | 87.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 50 | 87.75 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 82 | 87.98 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 83 | 87.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 85 | 88.03 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 101 | 88.08 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 192 | 89.03 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 194 | 89.05 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 211 | 89.11 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 234 | 89.22 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 254 | 89.35 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 274 | 89.44 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 283 | 89.47 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 302 | 89.54 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 306 | 89.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 308 | 89.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 313 | 89.56 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 374 | 89.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 384 | 89.69 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 404 | 89.70 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 408 | 89.72 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 441 | 89.75 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 474 | 89.80 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 491 | 89.82 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 504 | 89.84 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 511 | 89.85 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 537 | 89.87 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 553 | 89.89 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 622 | 89.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 749 | 90.23 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 849 | 90.43 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 916 | 90.57 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 938 | 90.63 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 997 | 90.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |