Os12g0181900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0181900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.78 | 0.599 | 4.39 | -0.235 | 1.22 | 1.02 | 1.23 | -3.15 | 0.141 | 20.3 | 29.69 | 197 | -- | -- |
| 162.14 | 0.593 | 4.36 | 0.0628 | 1.15 | 0.73 | 1.08 | -- | 0.13 | 20.4 | 29.1 | 301 | -- | -- |
| 166.78 | 0.601 | 4.39 | -0.229 | 1.19 | 1.01 | -- | -2.42 | 0.127 | 20.5 | 29.54 | 217 | -- | -- |
| 165.8 | 0.6 | 4.37 | 0.0206 | 1.13 | 0.815 | -- | -- | 0.121 | 20.6 | 29.04 | 293 | -- | -- |
| 218.42 | 0.688 | 4.35 | -0.0758 | -- | 1.22 | -- | 0.04 | 0.0895 | -- | 28.39 | 476 | -- | -- |
| 177.99 | 0.625 | 4.36 | 0.197 | 1.4 | -- | 1.53 | -- | 0.186 | 19.6 | -- | -- | -- | -- |
| 184.55 | 0.636 | 4.36 | 0.159 | 1.4 | -- | -- | -- | 0.189 | 19.6 | -- | -- | -- | -- |
| 217.27 | 0.687 | 4.36 | -0.0883 | -- | 1.28 | -- | -- | 0.00268 | -- | 28.27 | 465 | -- | -- |
| 165.81 | 0.6 | 4.37 | -- | 1.12 | 0.819 | -- | -- | 0.121 | 20.6 | 29.03 | 293 | -- | -- |
| 290.47 | 0.796 | 4.32 | 0.14 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 185.22 | 0.637 | 4.36 | -- | 1.4 | -- | -- | -- | 0.171 | 19.6 | -- | -- | -- | -- |
| 217.47 | 0.687 | 4.36 | -- | -- | 1.27 | -- | -- | 0.0136 | -- | 28.27 | 465 | -- | -- |
| 290.98 | 0.796 | 4.33 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 16 | 156.97 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 26 | 157.58 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 32 | 157.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 33 | 157.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 47 | 158.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 54 | 158.68 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 64 | 158.78 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 67 | 158.80 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 71 | 158.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 78 | 158.90 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 147 | 159.84 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 154 | 159.91 | temperature | 25.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 186 | 160.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 231 | 160.62 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 250 | 160.88 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 262 | 160.94 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 263 | 160.94 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 8 |
| 278 | 160.97 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 13 |
| 284 | 161.01 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 285 | 161.03 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 319 | 161.31 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 323 | 161.33 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 336 | 161.41 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 9 |
| 350 | 161.51 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 358 | 161.54 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 361 | 161.55 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 381 | 161.60 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 392 | 161.63 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 403 | 161.69 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 3 |
| 408 | 161.73 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 16 |
| 510 | 162.30 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 516 | 162.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 541 | 162.41 | temperature | 25.0 | 720 | > th | dose independent | sin | 16 | NA |
| 546 | 162.43 | humidity | 90.0 | 720 | > th | dose independent | sin | 16 | NA |
| 553 | 162.46 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 13 |
| 572 | 162.50 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 573 | 162.50 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 598 | 162.59 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 613 | 162.65 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 7 |
| 644 | 162.72 | temperature | 30.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 651 | 162.75 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 1 |
| 670 | 162.81 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 683 | 162.86 | temperature | 25.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 684 | 162.86 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 694 | 162.89 | radiation | 1.0 | 720 | > th | dose independent | sin | 18 | NA |
| 707 | 162.93 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 719 | 162.95 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 720 | 162.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 21 |
| 724 | 162.96 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 766 | 163.08 | humidity | 90.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 770 | 163.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 5 |
| 805 | 163.22 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 873 | 163.38 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 906 | 163.45 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 910 | 163.46 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 911 | 163.47 | temperature | 30.0 | 270 | > th | dose independent | sin | 3 | NA |
| 929 | 163.50 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 944 | 163.53 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 959 | 163.57 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 14 |
| 963 | 163.58 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 2 |