Os12g0180400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6).
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Os12g0180400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.62 | 0.256 | 12.8 | -0.398 | 0.058 | 1.32 | -0.339 | -1.59 | -0.00174 | 11.3 | 16.9 | 706 | -- | -- |
| 31.41 | 0.261 | 12.7 | -0.0995 | 0.0495 | 1.33 | -0.0238 | -- | 0.0949 | 10.5 | 15.42 | 712 | -- | -- |
| 29.86 | 0.254 | 12.8 | -0.354 | 0.111 | 1.34 | -- | -1.47 | -0.00439 | 5.06 | 17.09 | 567 | -- | -- |
| 31.34 | 0.261 | 12.7 | -0.108 | 0.061 | 1.42 | -- | -- | 0.0793 | 10.1 | 14.85 | 704 | -- | -- |
| 30.19 | 0.256 | 12.7 | -0.348 | -- | 1.29 | -- | -1.37 | 0.0167 | -- | 16.94 | 666 | -- | -- |
| 57.07 | 0.354 | 12.7 | 0.254 | 0.291 | -- | 0.0907 | -- | 0.3 | 20 | -- | -- | -- | -- |
| 57.09 | 0.354 | 12.7 | 0.252 | 0.292 | -- | -- | -- | 0.301 | 20 | -- | -- | -- | -- |
| 31.52 | 0.261 | 12.7 | -0.096 | -- | 1.38 | -- | -- | 0.087 | -- | 14.71 | 694 | -- | -- |
| 31.62 | 0.262 | 12.7 | -- | 0.0492 | 1.37 | -- | -- | 0.0986 | 10.2 | 14.9 | 694 | -- | -- |
| 61.74 | 0.367 | 12.7 | 0.249 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 58.76 | 0.359 | 12.7 | -- | 0.29 | -- | -- | -- | 0.273 | 20.1 | -- | -- | -- | -- |
| 31.74 | 0.262 | 12.7 | -- | -- | 1.34 | -- | -- | 0.102 | -- | 14.8 | 686 | -- | -- |
| 63.38 | 0.372 | 12.7 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 3 | 28.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 21 | 28.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 68 | 28.74 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 69 | 28.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 92 | 28.78 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 123 | 28.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 177 | 28.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 322 | 29.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 351 | 29.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 387 | 29.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 702 | 29.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 731 | 29.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 791 | 29.89 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 884 | 29.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 916 | 30.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 984 | 30.11 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |