Os12g0179100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0179100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.31 | 0.418 | 7.1 | 0.344 | 1.49 | 0.426 | -0.873 | 2.05 | 0.0355 | 20.9 | 10 | 4427 | -- | -- |
| 81.99 | 0.422 | 7.14 | 0.393 | 1.48 | 0.291 | -0.938 | -- | 0.00126 | 20.9 | 21.64 | 4373 | -- | -- |
| 79.36 | 0.415 | 7.1 | 0.358 | 1.52 | 0.477 | -- | 2.42 | 0.0473 | 20.9 | 9.981 | 3729 | -- | -- |
| 83.65 | 0.426 | 7.14 | 0.464 | 1.55 | 0.329 | -- | -- | 0.00345 | 21 | 20.99 | 3690 | -- | -- |
| 161.11 | 0.594 | 7.13 | 0.362 | -- | 0.726 | -- | -0.405 | -0.117 | -- | 9.981 | 3729 | -- | -- |
| 84.55 | 0.431 | 7.16 | 0.441 | 1.5 | -- | -0.806 | -- | -0.04 | 20.9 | -- | -- | -- | -- |
| 86.75 | 0.436 | 7.16 | 0.468 | 1.5 | -- | -- | -- | -0.04 | 20.9 | -- | -- | -- | -- |
| 162.15 | 0.596 | 7.13 | 0.396 | -- | 0.724 | -- | -- | -0.109 | -- | 9.981 | 3729 | -- | -- |
| 89.27 | 0.44 | 7.18 | -- | 1.48 | 0.302 | -- | -- | -0.0727 | 21.1 | 29.47 | 30974 | -- | -- |
| 215.76 | 0.686 | 7.12 | 0.469 | -- | -- | -- | -- | -0.05 | -- | -- | -- | -- | -- |
| 92.51 | 0.45 | 7.17 | -- | 1.5 | -- | -- | -- | -0.0921 | 21 | -- | -- | -- | -- |
| 166.28 | 0.603 | 7.14 | -- | -- | 0.734 | -- | -- | -0.154 | -- | 9.981 | 3729 | -- | -- |
| 221.56 | 0.695 | 7.13 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.12 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 78.42 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 3 | 78.42 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 15 | 78.65 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 21 | 78.83 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 38 | 78.98 | radiation | 20.0 | 10 | > th | dose independent | rect. | 12 | 22 |
| 40 | 78.99 | wind | 1.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 42 | 78.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 46 | 79.01 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 48 | 79.01 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 19 | 19 |
| 52 | 79.02 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 68 | 79.05 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 76 | 79.11 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 11 |
| 111 | 79.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 117 | 79.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 120 | 79.25 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 122 | 79.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 128 | 79.30 | radiation | 10.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 131 | 79.32 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 133 | 79.33 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 134 | 79.33 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 139 | 79.34 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 175 | 79.38 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 194 | 79.40 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 198 | 79.41 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 199 | 79.41 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 206 | 79.43 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 212 | 79.43 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 226 | 79.45 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 22 |
| 241 | 79.47 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 246 | 79.47 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 16 | 22 |
| 252 | 79.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 253 | 79.48 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 256 | 79.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 16 | 18 |
| 263 | 79.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 272 | 79.49 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 281 | 79.49 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 282 | 79.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 8 |
| 387 | 79.56 | wind | 1.0 | 30 | > th | dose independent | sin | 23 | NA |
| 410 | 79.58 | radiation | 10.0 | 4320 | < th | dose independent | no | NA | NA |
| 413 | 79.58 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 4 | 16 |
| 443 | 79.58 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 450 | 79.58 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 451 | 79.58 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 509 | 79.60 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 517 | 79.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 534 | 79.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 538 | 79.61 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 11 | 19 |
| 553 | 79.63 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 560 | 79.63 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 578 | 79.64 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 11 | 20 |
| 593 | 79.66 | humidity | 80.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 615 | 79.68 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 646 | 79.71 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 647 | 79.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 648 | 79.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 649 | 79.72 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 661 | 79.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 674 | 79.75 | radiation | 10.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 675 | 79.75 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 692 | 79.77 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 20 | NA |
| 695 | 79.77 | radiation | 20.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 702 | 79.78 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 20 | NA |
| 711 | 79.79 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 14 |
| 730 | 79.80 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 740 | 79.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 746 | 79.81 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 751 | 79.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 754 | 79.82 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 14 |
| 757 | 79.82 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 773 | 79.83 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 14 |
| 790 | 79.84 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 791 | 79.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 801 | 79.84 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 17 |
| 807 | 79.84 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 842 | 79.85 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 848 | 79.86 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 899 | 79.87 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 953 | 79.89 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 12 |