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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0178300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF248, methyltransferase putative family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0201) R2 : 0.0747
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.257 (0.0424) R2dN8 : 0.0965 R2N8 : 0.0747
σ : 0.379
deviance : 65.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.94 0.367 2.8 0.0249 0.0657 -0.4 -0.0207 0.104 0.463 9.32 10.72 4741 -- --
60.94 0.364 2.79 0.0195 0.0655 -0.407 -0.0236 -- 0.465 9.2 10.8 4736 -- --
60.93 0.364 2.79 0.035 0.064 -0.399 -- 0.153 0.467 9.36 10.8 4706 -- --
60.94 0.364 2.79 0.0185 0.0663 -0.41 -- -- 0.466 9.37 10.8 4709 -- --
61.17 0.364 2.8 0.0323 -- -0.388 -- 0.133 0.462 -- 10.8 4665 -- --
65.21 0.379 2.84 0.0238 0.105 -- -0.148 -- 0.257 4.06 -- -- -- --
65.27 0.378 2.84 0.0255 0.104 -- -- -- 0.258 4.09 -- -- -- --
61.18 0.364 2.8 0.0184 -- -0.392 -- -- 0.457 -- 10.8 4741 -- --
60.95 0.364 2.79 -- 0.0662 -0.41 -- -- 0.464 9.35 10.8 4708 -- --
65.86 0.379 2.84 0.0298 -- -- -- -- 0.26 -- -- -- -- --
65.29 0.378 2.84 -- 0.104 -- -- -- 0.255 4.08 -- -- -- --
61.19 0.364 2.8 -- -- -0.392 -- -- 0.457 -- 10.8 4741 -- --
65.88 0.379 2.84 -- -- -- -- -- 0.257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.35 wind 3.0 30 > th dose dependent rect. 6 1
2 56.45 temperature 25.0 30 > th dose dependent rect. 6 1
3 56.60 atmosphere 1010.0 10 < th dose independent rect. 6 1
6 56.79 atmosphere 1010.0 30 < th dose dependent rect. 6 1
7 57.00 radiation 10.0 30 < th dose independent rect. 6 1
8 57.01 temperature 25.0 30 > th dose dependent rect. 4 3
10 57.73 wind 3.0 30 > th dose independent rect. 6 1
13 58.52 temperature 25.0 30 > th dose dependent rect. 2 5
18 59.13 temperature 25.0 90 > th dose independent rect. 4 3
21 59.75 humidity 90.0 30 < th dose dependent rect. 6 1
23 59.93 wind 1.0 30 < th dose independent rect. 6 1
26 60.08 radiation 10.0 30 < th dose dependent rect. 6 1
31 60.30 radiation 1.0 10 > th dose dependent rect. 6 1
35 60.51 wind 9.0 1440 < th dose independent rect. 23 1
36 60.51 temperature 10.0 1440 > th dose independent rect. 23 1
39 60.51 temperature 30.0 1440 < th dose independent rect. 23 1
43 60.51 humidity 50.0 1440 > th dose independent rect. 23 1
53 60.51 atmosphere 995.0 1440 > th dose independent rect. 23 1
54 60.51 radiation 1.0 1440 < th dose independent rect. 23 1
74 60.51 temperature 10.0 1440 > th dose independent rect. 24 23
77 60.51 radiation 1.0 1440 < th dose dependent rect. 23 1
83 60.54 temperature 25.0 30 > th dose independent rect. 22 1
84 60.54 temperature 20.0 30 > th dose dependent rect. 22 1
86 60.55 atmosphere 1005.0 30 > th dose dependent rect. 22 1
89 60.58 humidity 90.0 30 < th dose independent rect. 22 1
92 60.59 wind 3.0 30 < th dose independent rect. 22 1
96 60.60 humidity 80.0 30 > th dose independent rect. 22 1
99 60.61 atmosphere 1005.0 30 > th dose independent rect. 22 1
101 60.63 precipitation 0.1 30 < th dose independent rect. 22 1
103 60.63 precipitation 0.1 30 < th dose dependent rect. 22 1
104 60.64 wind 1.0 30 > th dose independent rect. 22 1
106 60.64 wind 5.0 30 < th dose dependent rect. 22 1
112 60.65 temperature 10.0 30 > th dose independent rect. 22 1
114 60.65 temperature 30.0 30 < th dose independent rect. 22 1
115 60.65 humidity 50.0 30 > th dose independent rect. 22 1
119 60.65 atmosphere 1010.0 30 < th dose independent rect. 22 1
121 60.65 radiation 1.0 30 < th dose independent rect. 22 1
126 60.65 temperature 10.0 30 > th dose independent rect. 23 23
127 60.65 radiation 1.0 30 < th dose dependent rect. 22 1
133 60.66 humidity 50.0 30 > th dose dependent rect. 22 1
141 60.75 humidity 90.0 30 < th dose dependent rect. 22 1
145 60.78 wind 1.0 30 > th dose dependent rect. 22 1
148 60.82 atmosphere 1015.0 30 < th dose dependent rect. 22 1
153 60.91 temperature 25.0 10 > th dose dependent rect. 22 9
156 60.94 temperature 30.0 30 < th dose dependent rect. 22 1
157 60.96 wind 9.0 30 < th dose independent rect. 23 23
208 61.32 temperature 25.0 10 > th dose dependent rect. 20 11
225 61.65 humidity 90.0 30 < th dose independent rect. 6 1
227 61.66 wind 9.0 1440 < th dose independent rect. 7 1
228 61.66 temperature 10.0 1440 > th dose independent rect. 7 1
232 61.66 temperature 30.0 1440 < th dose independent rect. 7 1
236 61.66 humidity 50.0 1440 > th dose independent rect. 7 1
241 61.66 atmosphere 995.0 1440 > th dose independent rect. 7 1
242 61.66 atmosphere 1015.0 1440 < th dose independent rect. 7 1
243 61.66 temperature 10.0 1440 > th dose independent rect. 8 23
248 61.67 wind 5.0 30 < th dose independent rect. 6 1
251 61.67 temperature 10.0 30 > th dose independent rect. 6 1
253 61.67 temperature 30.0 30 < th dose independent rect. 6 1
254 61.67 humidity 50.0 30 > th dose independent rect. 6 1
258 61.67 atmosphere 995.0 30 > th dose independent rect. 6 1
266 61.67 precipitation 0.1 30 < th dose independent rect. 6 1
267 61.67 temperature 10.0 30 > th dose independent rect. 7 23
269 61.67 precipitation 0.1 30 < th dose dependent rect. 6 1
271 61.68 radiation 1.0 30 > th dose independent rect. 6 1
279 61.72 wind 9.0 30 < th dose independent rect. 7 23
317 61.95 humidity 50.0 30 > th dose dependent rect. 6 1
320 61.98 radiation 40.0 1440 < th dose independent rect. 7 1
326 62.05 wind 9.0 30 < th dose dependent rect. 6 1
332 62.14 temperature 25.0 90 > th dose independent rect. 20 11
348 62.29 atmosphere 995.0 30 > th dose dependent rect. 6 1
375 62.47 temperature 25.0 1440 < th dose independent rect. 4 2
382 62.51 humidity 80.0 4320 < th dose dependent rect. 1 3
390 62.53 atmosphere 995.0 30 > th dose independent rect. 7 23
404 62.57 precipitation 0.1 30 < th dose independent rect. 7 23
406 62.57 precipitation 0.1 30 < th dose dependent rect. 7 23
460 62.74 humidity 80.0 4320 < th dose independent rect. 4 2
463 62.75 humidity 80.0 4320 > th dose independent rect. 4 2
464 62.75 radiation 10.0 30 < th dose independent rect. 6 17
466 62.76 humidity 80.0 4320 < th dose independent rect. 3 4
472 62.78 humidity 80.0 4320 < th dose dependent rect. 22 1
480 62.81 humidity 80.0 4320 > th dose independent rect. 3 4
486 62.83 temperature 25.0 1440 < th dose independent rect. 1 5
512 62.92 humidity 90.0 10 < th dose dependent rect. 4 3
515 62.93 humidity 80.0 4320 < th dose independent rect. 22 9
519 62.95 humidity 80.0 4320 < th dose dependent rect. 21 9
526 62.97 temperature 10.0 1440 > th dose independent rect. 24 7
529 62.97 temperature 30.0 1440 < th dose independent rect. 24 7
533 62.97 humidity 50.0 1440 > th dose independent rect. 24 7
538 62.97 atmosphere 995.0 1440 > th dose independent rect. 24 7
539 62.97 radiation 40.0 1440 < th dose independent rect. 24 7
543 62.97 temperature 10.0 1440 > th dose independent rect. 7 17
546 62.97 atmosphere 995.0 30 > th dose independent rect. 23 23
554 62.99 precipitation 0.1 30 < th dose independent rect. 6 17
556 62.99 precipitation 0.1 30 < th dose dependent rect. 6 17
569 63.02 wind 9.0 30 < th dose independent rect. 23 7
570 63.02 temperature 10.0 30 > th dose independent rect. 23 7
571 63.02 temperature 30.0 30 < th dose independent rect. 23 7
572 63.02 humidity 50.0 30 > th dose independent rect. 23 7
575 63.02 atmosphere 995.0 30 > th dose independent rect. 23 7
576 63.02 radiation 20.0 30 < th dose independent rect. 23 7
579 63.02 temperature 10.0 30 > th dose independent rect. 6 17
581 63.02 atmosphere 1015.0 30 < th dose independent rect. 6 17
583 63.02 precipitation 0.1 30 < th dose independent rect. 23 23
584 63.02 precipitation 0.1 30 < th dose dependent rect. 23 23
590 63.03 radiation 40.0 30 < th dose dependent rect. 23 7
595 63.04 humidity 80.0 4320 > th dose independent rect. 22 9
601 63.05 humidity 50.0 30 > th dose independent rect. 7 23
604 63.06 precipitation 0.1 30 < th dose independent rect. 23 7
605 63.06 temperature 30.0 30 < th dose dependent rect. 6 1
607 63.06 precipitation 0.1 30 < th dose dependent rect. 23 7
633 63.08 wind 9.0 30 < th dose independent rect. 6 17
641 63.09 radiation 1.0 90 < th dose independent rect. 23 10
652 63.11 temperature 25.0 720 > th dose independent rect. 7 2
669 63.12 wind 1.0 10 > th dose independent rect. 6 17
685 63.15 atmosphere 1005.0 30 > th dose dependent rect. 20 3
686 63.15 temperature 10.0 30 > th dose dependent rect. 23 7
688 63.16 temperature 25.0 720 > th dose independent rect. 1 1
709 63.19 wind 9.0 720 < th dose independent rect. 19 8
710 63.19 precipitation 0.1 720 < th dose independent rect. 19 8
713 63.19 wind 9.0 4320 > th dose dependent rect. 13 3
714 63.19 precipitation 0.1 720 < th dose dependent rect. 19 8
716 63.20 wind 9.0 4320 > th dose independent rect. 13 3
728 63.21 wind 9.0 4320 > th dose independent rect. 15 1
731 63.21 temperature 10.0 720 > th dose independent rect. 19 8
732 63.21 temperature 30.0 720 < th dose independent rect. 19 8
733 63.21 humidity 50.0 720 > th dose independent rect. 19 8
735 63.21 atmosphere 995.0 720 > th dose independent rect. 19 8
736 63.21 radiation 1.0 720 < th dose independent rect. 19 8
741 63.21 temperature 10.0 720 > th dose independent rect. 3 16
746 63.21 radiation 1.0 720 < th dose dependent rect. 19 8
758 63.22 radiation 1.0 90 < th dose dependent rect. 23 9
768 63.23 wind 9.0 4320 > th dose dependent rect. 13 1
773 63.24 temperature 25.0 30 > th dose independent rect. 20 3
775 63.24 temperature 10.0 720 > th dose independent rect. 7 8
776 63.24 atmosphere 1015.0 720 < th dose independent rect. 7 8
779 63.24 temperature 10.0 720 > th dose independent rect. 15 16
796 63.26 atmosphere 1015.0 30 < th dose independent rect. 7 23
799 63.27 wind 9.0 4320 > th dose independent rect. 13 1
803 63.27 temperature 10.0 720 > th dose dependent rect. 7 2
807 63.27 humidity 50.0 30 > th dose dependent rect. 23 7
819 63.29 humidity 80.0 30 > th dose independent rect. 6 17
821 63.30 temperature 25.0 1440 < th dose independent rect. 1 1
827 63.30 atmosphere 995.0 30 > th dose independent rect. 6 17
833 63.31 radiation 1.0 10 > th dose dependent rect. 18 13
836 63.32 wind 9.0 4320 < th dose independent rect. 13 3
839 63.32 atmosphere 995.0 720 > th dose independent rect. 7 8
842 63.32 temperature 25.0 720 > th dose independent rect. 19 12
857 63.33 wind 9.0 30 < th dose dependent rect. 23 7
865 63.34 wind 9.0 4320 < th dose independent rect. 15 1
870 63.34 atmosphere 1015.0 30 < th dose independent rect. 23 7
886 63.36 precipitation 0.1 720 < th dose independent rect. 19 2
894 63.36 precipitation 0.1 720 < th dose dependent rect. 19 2
896 63.37 wind 9.0 4320 < th dose independent rect. 13 1
897 63.37 wind 7.0 720 < th dose independent rect. 19 2
902 63.37 wind 9.0 4320 > th dose dependent rect. 15 1
906 63.37 radiation 40.0 30 < th dose dependent rect. 6 17
910 63.38 temperature 10.0 720 > th dose independent rect. 19 2
912 63.38 temperature 30.0 720 < th dose independent rect. 19 2
913 63.38 humidity 50.0 720 > th dose independent rect. 19 2
914 63.38 atmosphere 995.0 720 > th dose independent rect. 19 2
916 63.38 radiation 1.0 720 < th dose independent rect. 19 2
928 63.38 temperature 10.0 720 > th dose independent rect. 21 22
930 63.38 radiation 1.0 720 < th dose dependent rect. 19 2
937 63.39 humidity 90.0 30 < th dose independent rect. 20 3
940 63.39 precipitation 0.1 720 < th dose independent rect. 7 8
945 63.39 wind 1.0 30 < th dose dependent rect. 6 1
950 63.39 precipitation 0.1 720 < th dose dependent rect. 7 8
962 63.41 atmosphere 1015.0 720 < th dose independent rect. 19 2
966 63.41 atmosphere 995.0 720 > th dose independent rect. 3 16
973 63.41 radiation 1.0 90 < th dose dependent rect. 23 20
974 63.42 wind 1.0 720 > th dose independent rect. 19 2
983 63.42 precipitation 0.1 720 < th dose independent rect. 7 2