Os12g0178200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).
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Os12g0178200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.17 | 0.456 | 6.75 | 1.08 | 0.63 | 2.33 | 0.308 | -1.06 | 0.0476 | 17.5 | 22.84 | 101 | -- | -- |
| 94.77 | 0.453 | 6.73 | 1.23 | 0.627 | 2.27 | 0.131 | -- | 0.091 | 17.5 | 22.68 | 113 | -- | -- |
| 94.3 | 0.452 | 6.75 | 1.08 | 0.605 | 2.35 | -- | -0.948 | 0.0551 | 17.5 | 22.88 | 113 | -- | -- |
| 94.8 | 0.453 | 6.73 | 1.24 | 0.628 | 2.28 | -- | -- | 0.096 | 17.6 | 22.72 | 111 | -- | -- |
| 105.49 | 0.478 | 6.75 | 0.891 | -- | 2.85 | -- | -1.77 | -0.00196 | -- | 23.48 | 152 | -- | -- |
| 177.09 | 0.624 | 6.66 | 1.69 | 1.5 | -- | 1.23 | -- | 0.432 | 16.3 | -- | -- | -- | -- |
| 181.2 | 0.63 | 6.66 | 1.7 | 1.51 | -- | -- | -- | 0.439 | 16.4 | -- | -- | -- | -- |
| 107.59 | 0.483 | 6.73 | 1.16 | -- | 2.71 | -- | -- | 0.0615 | -- | 23.36 | 145 | -- | -- |
| 131.96 | 0.535 | 6.77 | -- | 0.502 | 2.65 | -- | -- | -0.0812 | 18.3 | 22.03 | 120 | -- | -- |
| 303.64 | 0.814 | 6.65 | 1.64 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 257.18 | 0.75 | 6.7 | -- | 1.48 | -- | -- | -- | 0.249 | 16.5 | -- | -- | -- | -- |
| 140.74 | 0.553 | 6.77 | -- | -- | 2.93 | -- | -- | -0.131 | -- | 22.59 | 151 | -- | -- |
| 374.47 | 0.903 | 6.69 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 2 | 81.92 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 5 | 82.10 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 9 | 82.48 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 14 | 82.79 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 16 | 83.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 34 | 84.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 58 | 86.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 72 | 86.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 275 | 92.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 276 | 92.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 479 | 96.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 497 | 97.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 498 | 97.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 603 | 98.45 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 612 | 98.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 22 |
| 620 | 98.61 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 624 | 98.63 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 625 | 98.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 656 | 98.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 690 | 98.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 809 | 99.31 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 910 | 99.94 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 911 | 99.95 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 922 | 100.00 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 945 | 100.23 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |