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Os12g0178100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0167) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0965 (0.0351) R2dN8 : 0.021 R2N8 : 0.0163
σ : 0.314
deviance : 45.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.2 0.231 11.7 -0.392 0.394 -0.497 0.147 0.344 -0.0353 11.5 29.64 94 -- --
24.3 0.23 11.7 -0.335 0.398 -0.51 0.0791 -- -0.0189 11.5 29.45 114 -- --
24.29 0.23 11.7 -0.381 0.39 -0.501 -- 0.264 -0.0355 11.5 29.64 89 -- --
24.31 0.23 11.7 -0.333 0.403 -0.507 -- -- -0.0243 11.5 29.4 124 -- --
31.17 0.26 11.7 -0.448 -- -0.957 -- 0.377 -0.0702 -- 47.35 6 -- --
27.66 0.247 11.7 -0.206 0.509 -- 0.0505 -- 0.0801 12.5 -- -- -- --
27.67 0.246 11.7 -0.204 0.509 -- -- -- 0.0803 12.5 -- -- -- --
31.26 0.26 11.7 -0.393 -- -0.939 -- -- -0.0533 -- 52.61 5 -- --
26.87 0.243 11.7 -- 0.409 -0.423 -- -- 0.0528 12 44.08 56 -- --
43.95 0.31 11.7 -0.222 -- -- -- -- 0.0719 -- -- -- -- --
28.76 0.251 11.7 -- 0.512 -- -- -- 0.103 12.5 -- -- -- --
35.08 0.277 11.7 -- -- -0.815 -- -- 0.00406 -- 44.08 56 -- --
45.25 0.314 11.7 -- -- -- -- -- 0.0965 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.66 temperature 15.0 10 > th dose dependent rect. 9 18
3 22.80 temperature 15.0 10 > th dose dependent rect. 9 14
4 22.83 temperature 15.0 10 > th dose dependent rect. 8 23
5 22.83 temperature 10.0 90 > th dose dependent rect. 8 23
8 22.85 temperature 15.0 90 > th dose dependent rect. 8 21
10 22.92 temperature 20.0 30 > th dose dependent rect. 20 18
21 23.01 temperature 15.0 10 > th dose dependent rect. 9 16
30 23.10 temperature 15.0 90 > th dose dependent rect. 19 23
77 23.38 temperature 15.0 270 > th dose dependent rect. 17 21
81 23.40 temperature 10.0 270 > th dose dependent rect. 6 21
120 23.57 temperature 25.0 270 > th dose independent rect. 16 22
194 23.81 temperature 25.0 270 > th dose independent rect. 17 19
204 23.83 humidity 80.0 10 < th dose independent rect. 9 9
207 23.84 humidity 90.0 10 < th dose dependent rect. 9 9
212 23.85 humidity 60.0 90 > th dose dependent rect. 5 14
240 23.91 temperature 25.0 270 < th dose independent rect. 10 22
241 23.91 temperature 20.0 30 > th dose dependent rect. 9 5
244 23.92 temperature 25.0 270 > th dose dependent rect. 9 1
251 23.94 temperature 25.0 270 > th dose independent rect. 8 17
253 23.94 temperature 10.0 90 > th dose dependent sin 5 NA
260 23.95 temperature 30.0 30 < th dose dependent rect. 21 23
261 23.96 temperature 30.0 90 < th dose dependent rect. 11 22
286 24.02 temperature 15.0 30 > th dose dependent rect. 24 14
291 24.02 radiation 1.0 720 < th dose dependent rect. 5 19
320 24.07 temperature 30.0 30 < th dose dependent rect. 3 23
330 24.09 radiation 1.0 720 < th dose independent rect. 5 19
333 24.09 temperature 15.0 270 > th dose dependent rect. 22 14
349 24.12 humidity 60.0 90 > th dose dependent rect. 5 12
358 24.13 humidity 60.0 10 > th dose dependent rect. 6 14
362 24.13 temperature 30.0 90 < th dose dependent rect. 1 23
371 24.14 temperature 30.0 30 < th dose dependent rect. 23 23
374 24.15 temperature 25.0 90 > th dose independent rect. 8 22
389 24.18 humidity 80.0 10 < th dose independent rect. 9 5
391 24.18 temperature 25.0 270 > th dose independent rect. 13 23
398 24.18 temperature 30.0 90 < th dose dependent rect. 13 23
409 24.20 temperature 30.0 90 < th dose dependent sin 6 NA
417 24.21 temperature 30.0 90 < th dose dependent no NA NA
438 24.23 temperature 20.0 30 > th dose dependent rect. 2 12
449 24.24 temperature 15.0 30 > th dose dependent rect. 9 9
456 24.25 atmosphere 1015.0 10 < th dose dependent rect. 9 5
465 24.26 humidity 60.0 90 > th dose dependent sin 1 NA
471 24.26 temperature 30.0 90 < th dose dependent rect. 15 23
478 24.27 humidity 90.0 10 < th dose dependent rect. 9 14
481 24.27 temperature 30.0 90 < th dose dependent rect. 17 23
490 24.29 temperature 25.0 270 < th dose independent rect. 15 22
491 24.29 temperature 10.0 30 > th dose dependent no NA NA
500 24.30 humidity 80.0 10 < th dose independent rect. 9 7
501 24.30 humidity 80.0 90 > th dose independent rect. 5 14
504 24.30 temperature 25.0 270 < th dose independent rect. 15 18
505 24.30 temperature 25.0 270 < th dose independent rect. 13 20
529 24.32 radiation 1.0 720 < th dose independent rect. 20 23
553 24.33 humidity 90.0 30 < th dose dependent rect. 9 5
580 24.35 humidity 90.0 270 < th dose independent rect. 8 13
588 24.35 atmosphere 1015.0 270 < th dose dependent rect. 9 1
598 24.35 temperature 20.0 10 > th dose dependent rect. 17 23
600 24.36 temperature 25.0 720 < th dose independent rect. 16 7
616 24.37 temperature 25.0 270 > th dose independent no NA NA
626 24.37 humidity 90.0 10 < th dose dependent rect. 9 16
630 24.37 temperature 20.0 10 > th dose dependent rect. 4 23
636 24.38 radiation 1.0 720 > th dose independent rect. 8 22
638 24.38 humidity 60.0 10 > th dose dependent sin 23 NA
640 24.38 humidity 90.0 10 < th dose dependent rect. 9 12
644 24.38 temperature 15.0 30 > th dose dependent rect. 11 16
660 24.39 radiation 1.0 720 < th dose dependent rect. 20 23
661 24.40 temperature 25.0 270 < th dose independent no NA NA
677 24.41 radiation 1.0 1440 < th dose independent rect. 17 1
688 24.41 temperature 30.0 90 < th dose dependent rect. 5 14
702 24.42 temperature 25.0 720 < th dose independent rect. 17 5
706 24.42 temperature 25.0 270 < th dose independent rect. 2 23
707 24.42 temperature 25.0 270 < th dose independent rect. 23 23
720 24.42 temperature 20.0 30 > th dose dependent rect. 2 23
745 24.44 radiation 40.0 10 > th dose independent rect. 13 23
759 24.45 radiation 1.0 1440 > th dose independent rect. 17 1
778 24.46 humidity 90.0 10 < th dose dependent rect. 9 7
787 24.46 temperature 20.0 10 > th dose dependent rect. 24 23
808 24.48 humidity 80.0 90 < th dose independent sin 1 NA
809 24.48 wind 7.0 43200 > th dose independent rect. 17 1
811 24.48 humidity 90.0 30 < th dose independent rect. 9 14
817 24.48 temperature 20.0 30 > th dose dependent rect. 9 3
841 24.49 temperature 20.0 30 > th dose dependent rect. 11 23
859 24.51 radiation 40.0 10 < th dose independent rect. 6 14
867 24.51 radiation 1.0 1440 < th dose dependent rect. 17 1
874 24.52 temperature 25.0 720 > th dose independent rect. 15 8
876 24.52 radiation 1.0 720 > th dose independent rect. 8 10
898 24.53 temperature 20.0 30 > th dose dependent rect. 20 7
899 24.53 temperature 20.0 30 > th dose dependent rect. 20 9
931 24.55 wind 7.0 43200 < th dose independent rect. 17 4
947 24.55 temperature 30.0 270 < th dose dependent rect. 13 20
954 24.56 precipitation 0.1 43200 > th dose independent rect. 17 1
983 24.56 temperature 30.0 30 < th dose dependent rect. 5 23
986 24.57 wind 7.0 43200 < th dose independent rect. 17 1
987 24.57 wind 7.0 43200 > th dose independent rect. 17 4
995 24.57 radiation 1.0 720 > th dose independent rect. 15 23
997 24.57 wind 5.0 43200 > th dose dependent rect. 17 1
998 24.57 wind 5.0 43200 > th dose dependent rect. 17 4