Os12g0177500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os12g0177500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.63 | 0.268 | 11.3 | -0.979 | 0.509 | -1.6 | -0.782 | -0.904 | -0.0168 | 16.3 | 31.04 | 216 | -- | -- |
| 33.04 | 0.268 | 11.3 | -1.13 | 0.515 | -1.64 | -0.573 | -- | -0.0301 | 16.5 | 32.54 | 182 | -- | -- |
| 33.89 | 0.271 | 11.3 | -1.07 | 0.499 | -1.58 | -- | -0.268 | -0.0385 | 16.5 | 31.13 | 196 | -- | -- |
| 33.9 | 0.271 | 11.3 | -1.13 | 0.513 | -1.61 | -- | -- | -0.0415 | 16.6 | 31.77 | 183 | -- | -- |
| 43.89 | 0.309 | 11.3 | -1.17 | -- | -2.15 | -- | -0.348 | -0.116 | -- | 32.58 | 188 | -- | -- |
| 64.72 | 0.377 | 11.3 | -0.748 | 1.01 | -- | -0.276 | -- | 0.228 | 16.2 | -- | -- | -- | -- |
| 64.93 | 0.377 | 11.3 | -0.75 | 1.01 | -- | -- | -- | 0.226 | 16.2 | -- | -- | -- | -- |
| 43.97 | 0.309 | 11.3 | -1.24 | -- | -2.29 | -- | -- | -0.101 | -- | 48.88 | 184 | -- | -- |
| 63.59 | 0.371 | 11.3 | -- | 0.692 | -1.21 | -- | -- | 0.17 | 16.5 | 42.94 | 136 | -- | -- |
| 120.14 | 0.512 | 11.3 | -0.791 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 79.77 | 0.418 | 11.3 | -- | 1.03 | -- | -- | -- | 0.31 | 16.2 | -- | -- | -- | -- |
| 82.04 | 0.422 | 11.3 | -- | -- | -1.87 | -- | -- | 0.0833 | -- | 49.66 | 166 | -- | -- |
| 136.64 | 0.546 | 11.3 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 2 | 29.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 12 | 31.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 19 | 31.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 31 | 31.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 36 | 32.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 66 | 32.99 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 98 | 33.67 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 190 | 35.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 230 | 35.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 339 | 36.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 400 | 37.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 453 | 37.64 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 20 |
| 459 | 37.71 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 569 | 38.57 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 597 | 38.83 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 17 |
| 666 | 39.34 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 890 | 40.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 933 | 40.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 1 |