Os12g0176800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heterochromatin protein (Fragment).
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Os12g0176800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heterochromatin protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.18 | 0.385 | 8.59 | -0.732 | 0.547 | 0.705 | -0.166 | -0.0108 | 0.0202 | 12.4 | 25.98 | 10 | -- | -- |
| 67.05 | 0.381 | 8.59 | -0.733 | 0.561 | 0.713 | -0.14 | -- | 0.0176 | 12.4 | 26.32 | 9 | -- | -- |
| 67.08 | 0.381 | 8.6 | -0.757 | 0.563 | 0.752 | -- | -0.535 | 0.0186 | 12.5 | 26.7 | 9 | -- | -- |
| 67.12 | 0.382 | 8.59 | -0.73 | 0.568 | 0.712 | -- | -- | 0.0357 | 12.5 | 26.65 | 9 | -- | -- |
| 81.66 | 0.421 | 8.61 | -0.878 | -- | 1.2 | -- | -0.587 | -0.0254 | -- | 25.7 | 9 | -- | -- |
| 74.18 | 0.404 | 8.59 | -0.641 | 0.756 | -- | 0.068 | -- | 0.0501 | 13.2 | -- | -- | -- | -- |
| 74.2 | 0.403 | 8.59 | -0.638 | 0.756 | -- | -- | -- | 0.0504 | 13.2 | -- | -- | -- | -- |
| 81.88 | 0.421 | 8.61 | -0.811 | -- | 1.12 | -- | -- | -0.0125 | -- | 25.7 | 9 | -- | -- |
| 80.73 | 0.418 | 8.57 | -- | 0.625 | 0.548 | -- | -- | 0.121 | 12.8 | 26.8 | 9 | -- | -- |
| 109.59 | 0.489 | 8.6 | -0.667 | -- | -- | -- | -- | 0.0352 | -- | -- | -- | -- | -- |
| 84.94 | 0.431 | 8.57 | -- | 0.767 | -- | -- | -- | 0.122 | 13.2 | -- | -- | -- | -- |
| 98.88 | 0.463 | 8.59 | -- | -- | 0.997 | -- | -- | 0.0821 | -- | 25.7 | 7 | -- | -- |
| 121.34 | 0.514 | 8.58 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.66 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 5 | 64.86 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 12 | 65.24 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 28 | 65.38 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 31 | 65.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 35 | 65.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 49 | 65.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 50 | 65.94 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 64 | 65.97 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 66 | 66.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 67 | 66.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 74 | 66.06 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 76 | 66.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 78 | 66.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 79 | 66.07 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 86 | 66.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 87 | 66.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 88 | 66.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 103 | 66.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 110 | 66.20 | temperature | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 118 | 66.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 126 | 66.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 141 | 66.32 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 144 | 66.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 146 | 66.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 159 | 66.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 163 | 66.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 164 | 66.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 167 | 66.42 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 172 | 66.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 211 | 66.59 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 218 | 66.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 246 | 66.73 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 11 |
| 251 | 66.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 257 | 66.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 266 | 66.76 | wind | 1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 287 | 66.83 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 310 | 66.90 | wind | 3 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 318 | 66.92 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 342 | 66.98 | wind | 9 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 356 | 67.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 393 | 67.10 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 17 |
| 494 | 67.26 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 16 |
| 496 | 67.26 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 13 | 19 |
| 498 | 67.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 505 | 67.27 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 535 | 67.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 557 | 67.35 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 587 | 67.40 | wind | 5 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 647 | 67.48 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 9 |
| 672 | 67.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 692 | 67.53 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 694 | 67.53 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 14 |
| 721 | 67.56 | wind | 5 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 747 | 67.58 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 748 | 67.58 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 11 |
| 826 | 67.66 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 14 |
| 835 | 67.67 | wind | 3 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 837 | 67.67 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 841 | 67.67 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 877 | 67.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 880 | 67.71 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 7 |
| 883 | 67.71 | radiation | 40 | 90 | < th | dose dependent | sin | 3 | NA |
| 898 | 67.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 905 | 67.73 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 917 | 67.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 936 | 67.76 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 19 |
| 942 | 67.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 945 | 67.77 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 950 | 67.77 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 21 |
| 954 | 67.77 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 957 | 67.77 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 993 | 67.79 | atmosphere | 1000 | 10 | > th | dose independent | sin | 22 | NA |