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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0175800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.028) R2 : 0.399
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.61 (0.118) R2dE : 0.263 R2E : 0.0241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.863 (0.0608) R2dN8 : 0.375 R2N8 : 0.136
σ : 0.522
deviance : 125.4
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.4
memory length : 14
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.96 0.493 4.24 0.786 0.414 -1.32 -0.248 -1.52 -0.734 9.1 29.05 109 -- --
112.62 0.494 4.26 0.587 0.44 -1.33 0.00697 -- -0.761 9.05 31.41 108 -- --
110.16 0.489 4.24 0.773 0.417 -1.31 -- -1.46 -0.733 9.18 29.07 113 -- --
112.45 0.494 4.27 0.532 0.424 -1.35 -- -- -0.77 9.23 31.4 103 -- --
116.69 0.506 4.25 0.734 -- -1.42 -- -1.32 -0.725 -- 31.2 16 -- --
133.66 0.542 4.22 0.826 0.612 -- 0.494 -- -0.537 12.4 -- -- -- --
134.66 0.543 4.21 0.844 0.611 -- -- -- -0.535 12.2 -- -- -- --
118.75 0.51 4.28 0.521 -- -1.45 -- -- -0.781 -- 31.4 103 -- --
119.01 0.508 4.29 -- 0.43 -1.58 -- -- -0.862 8.5 31.24 104 -- --
158.11 0.588 4.23 0.824 -- -- -- -- -0.545 -- -- -- -- --
153.42 0.579 4.23 -- 0.599 -- -- -- -0.629 12.1 -- -- -- --
125.4 0.522 4.3 -- -- -1.61 -- -- -0.863 -- 31.4 14 -- --
176.02 0.619 4.25 -- -- -- -- -- -0.636 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.21 temperature 30 30 < th dose dependent rect. 3 23
5 109.79 temperature 30 90 < th dose dependent rect. 7 23
6 109.80 temperature 30 90 < th dose dependent rect. 21 23
9 110.04 temperature 20 10 > th dose dependent rect. 9 23
10 110.09 temperature 30 90 < th dose dependent no NA NA
11 110.10 temperature 30 90 < th dose dependent rect. 11 23
15 110.25 temperature 30 90 < th dose dependent rect. 17 23
17 110.38 temperature 30 90 < th dose dependent rect. 13 23
18 110.38 temperature 30 30 < th dose dependent rect. 23 23
23 110.51 temperature 30 90 < th dose dependent rect. 15 23
25 110.59 temperature 30 10 < th dose dependent rect. 13 23
28 110.64 temperature 15 90 > th dose dependent rect. 4 23
34 110.74 temperature 20 30 > th dose dependent rect. 11 23
37 110.83 temperature 15 10 > th dose dependent no NA NA
43 110.89 temperature 20 10 > th dose dependent rect. 1 23
47 110.93 temperature 20 10 > th dose dependent rect. 6 23
55 111.00 temperature 25 30 < th dose independent rect. 3 23
84 111.59 temperature 20 4320 < th dose independent rect. 18 6
90 111.67 temperature 20 4320 > th dose independent rect. 21 2
100 111.77 temperature 20 90 > th dose dependent rect. 13 23
108 111.81 temperature 30 10 < th dose dependent rect. 9 23
124 111.95 temperature 20 4320 < th dose independent rect. 21 2
125 111.95 temperature 20 90 > th dose dependent rect. 15 23
126 111.95 temperature 30 10 < th dose dependent rect. 19 23
128 111.97 temperature 25 90 < th dose independent rect. 7 23
139 112.03 temperature 25 1440 < th dose dependent rect. 9 18
140 112.04 temperature 20 4320 > th dose independent rect. 20 4
143 112.05 temperature 20 10 > th dose dependent rect. 15 23
151 112.11 temperature 20 30 > th dose dependent rect. 9 18
152 112.12 temperature 20 4320 < th dose independent rect. 17 11
163 112.15 temperature 20 4320 < th dose independent sin 16 NA
172 112.19 temperature 25 1440 < th dose dependent rect. 16 9
176 112.21 temperature 25 1440 < th dose dependent rect. 19 4
184 112.24 temperature 20 4320 > th dose independent rect. 17 11
187 112.24 temperature 25 1440 < th dose dependent sin 16 NA
194 112.25 temperature 20 4320 > th dose independent rect. 18 6
208 112.26 temperature 30 270 < th dose dependent rect. 9 23
268 112.39 temperature 20 4320 > th dose independent sin 16 NA
391 112.59 temperature 20 90 > th dose dependent rect. 19 23
425 112.64 temperature 25 1440 < th dose dependent rect. 15 21
457 112.69 temperature 25 1440 < th dose dependent no NA NA
488 112.74 temperature 25 1440 < th dose dependent rect. 19 23
490 112.75 temperature 20 1440 > th dose independent rect. 3 3
536 112.80 temperature 10 720 > th dose dependent rect. 20 16
556 112.84 temperature 20 1440 < th dose independent rect. 3 3
576 112.87 temperature 10 270 > th dose dependent sin 8 NA
630 112.95 temperature 25 270 < th dose independent rect. 20 23
763 113.15 temperature 20 10 > th dose dependent rect. 17 23
768 113.16 temperature 25 270 < th dose independent rect. 18 23
938 113.41 temperature 25 90 < th dose independent rect. 1 23
958 113.43 temperature 15 720 > th dose dependent rect. 22 14
971 113.45 temperature 25 270 < th dose independent rect. 23 23