Os12g0175700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonaspanin (TM9SF) family protein.
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Os12g0175700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonaspanin (TM9SF) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.59 | 0.341 | 10.1 | -0.0529 | 0.0144 | 0.673 | 0.824 | -0.774 | -0.156 | 19.7 | 19.2 | 2604 | -- | -- |
| 53.43 | 0.34 | 10 | 0.0419 | 0.0132 | 0.844 | 0.864 | -- | -0.149 | 19.3 | 19.19 | 2615 | -- | -- |
| 54.41 | 0.344 | 10.1 | -0.0895 | 0.0223 | 0.679 | -- | -0.827 | -0.16 | 19 | 19.15 | 2697 | -- | -- |
| 55.34 | 0.346 | 10 | 0.00724 | 0.0245 | 0.866 | -- | -- | -0.143 | 18.4 | 19.18 | 2697 | -- | -- |
| 54.44 | 0.344 | 10.1 | -0.0892 | -- | 0.677 | -- | -0.828 | -0.16 | -- | 19.16 | 2697 | -- | -- |
| 65.4 | 0.379 | 9.99 | 0.453 | 0.00641 | -- | 0.913 | -- | 0.0382 | 19.1 | -- | -- | -- | -- |
| 67.52 | 0.385 | 9.99 | 0.433 | 0.0335 | -- | -- | -- | 0.0396 | 0.286 | -- | -- | -- | -- |
| 55.36 | 0.347 | 10 | 0.0105 | -- | 0.861 | -- | -- | -0.14 | -- | 19.18 | 2697 | -- | -- |
| 55.33 | 0.346 | 10 | -- | 0.0256 | 0.873 | -- | -- | -0.14 | 18.5 | 19.1 | 2706 | -- | -- |
| 67.59 | 0.384 | 9.99 | 0.435 | -- | -- | -- | -- | 0.0402 | -- | -- | -- | -- | -- |
| 72.47 | 0.398 | 10 | -- | 0.0401 | -- | -- | -- | -0.00863 | 0.861 | -- | -- | -- | -- |
| 55.36 | 0.347 | 10 | -- | -- | 0.874 | -- | -- | -0.14 | -- | 19.1 | 2706 | -- | -- |
| 72.57 | 0.398 | 10 | -- | -- | -- | -- | -- | -0.00805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.72 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 18 |
| 5 | 52.42 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 8 | 52.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 9 | 52.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 10 | 52.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 11 | 52.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 14 | 52.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 16 | 52.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 21 | 52.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 22 | 52.82 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 21 |
| 25 | 52.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 26 | 52.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 36 | 52.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 46 | 52.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 49 | 52.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 50 | 53.02 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 58 | 53.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 62 | 53.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 63 | 53.10 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 64 | 53.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 77 | 53.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 87 | 53.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 92 | 53.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 94 | 53.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 105 | 53.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 125 | 53.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 140 | 53.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 166 | 53.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 317 | 53.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 328 | 53.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 352 | 53.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 381 | 53.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 442 | 53.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 481 | 53.79 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 510 | 53.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 544 | 53.89 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 586 | 53.99 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 602 | 54.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 643 | 54.12 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 677 | 54.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 683 | 54.17 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 696 | 54.21 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 724 | 54.27 | radiation | 40 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 741 | 54.30 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 864 | 54.53 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |