Os12g0173300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0173300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.98 | 0.274 | 9.44 | -0.697 | 0.628 | -1.36 | -0.384 | 0.118 | -0.0304 | 0.575 | 21.51 | 1462 | -- | -- |
| 33.97 | 0.271 | 9.45 | -0.683 | 0.623 | -1.34 | -0.37 | -- | -0.0365 | 0.55 | 21.84 | 1442 | -- | -- |
| 34.49 | 0.274 | 9.45 | -0.69 | 0.611 | -1.25 | -- | 0.237 | -0.0378 | 0.457 | 22.18 | 1406 | -- | -- |
| 34.52 | 0.274 | 9.44 | -0.663 | 0.617 | -1.3 | -- | -- | -0.0365 | 0.479 | 22.15 | 1403 | -- | -- |
| 53.92 | 0.342 | 9.47 | -0.802 | -- | -1.12 | -- | 0.89 | -0.143 | -- | 28.14 | 972 | -- | -- |
| 49.28 | 0.329 | 9.4 | -0.324 | 0.642 | -- | -0.381 | -- | 0.141 | 0.728 | -- | -- | -- | -- |
| 49.88 | 0.331 | 9.4 | -0.309 | 0.643 | -- | -- | -- | 0.143 | 0.617 | -- | -- | -- | -- |
| 54.71 | 0.344 | 9.45 | -0.626 | -- | -1.15 | -- | -- | -0.103 | -- | 26.92 | 957 | -- | -- |
| 43.86 | 0.308 | 9.42 | -- | 0.612 | -0.824 | -- | -- | 0.0736 | 0.48 | 22.84 | 1364 | -- | -- |
| 75.75 | 0.407 | 9.39 | -0.287 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 52.4 | 0.339 | 9.4 | -- | 0.638 | -- | -- | -- | 0.178 | 0.594 | -- | -- | -- | -- |
| 63.72 | 0.372 | 9.42 | -- | -- | -0.879 | -- | -- | 0.018 | -- | 26.98 | 943 | -- | -- |
| 77.92 | 0.412 | 9.38 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.68 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 13 | 34.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 20 | 34.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 50 | 34.34 | temperature | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 108 | 34.56 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 116 | 34.57 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 134 | 34.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 142 | 34.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 144 | 34.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 152 | 34.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 156 | 34.67 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 161 | 34.68 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 182 | 34.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 186 | 34.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 187 | 34.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 205 | 34.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 217 | 34.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 225 | 34.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 455 | 35.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 460 | 35.10 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 486 | 35.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 490 | 35.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 509 | 35.16 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 620 | 35.33 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 651 | 35.37 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 843 | 35.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |