Os12g0171900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0171900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.27 | 0.388 | 8.63 | -0.499 | 1.14 | 0.778 | 0.0122 | 2.05 | -0.747 | 19.6 | 23.83 | 49 | -- | -- |
| 70.74 | 0.392 | 8.66 | -0.679 | 1.13 | 0.995 | -0.0957 | -- | -0.797 | 19.7 | 24.1 | 51 | -- | -- |
| 68.23 | 0.385 | 8.63 | -0.463 | 1.15 | 0.745 | -- | 2.16 | -0.745 | 19.5 | 23.06 | 53 | -- | -- |
| 70.37 | 0.391 | 8.66 | -0.786 | 1.12 | 0.979 | -- | -- | -0.818 | 19.7 | 24.18 | 57 | -- | -- |
| 111.63 | 0.492 | 8.6 | -0.868 | -- | 1.43 | -- | 0.499 | -0.826 | -- | 24.5 | 389 | -- | -- |
| 84.93 | 0.432 | 8.64 | -0.606 | 1.34 | -- | 0.46 | -- | -0.714 | 18.6 | -- | -- | -- | -- |
| 85.45 | 0.433 | 8.64 | -0.613 | 1.34 | -- | -- | -- | -0.713 | 18.6 | -- | -- | -- | -- |
| 110.73 | 0.49 | 8.65 | -0.906 | -- | 1.52 | -- | -- | -0.878 | -- | 24.4 | 393 | -- | -- |
| 85.54 | 0.431 | 8.64 | -- | 1.16 | 0.773 | -- | -- | -0.696 | 19.3 | 24.9 | 51 | -- | -- |
| 178.97 | 0.625 | 8.61 | -0.645 | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
| 95.37 | 0.457 | 8.62 | -- | 1.35 | -- | -- | -- | -0.645 | 18.6 | -- | -- | -- | -- |
| 131.61 | 0.534 | 8.62 | -- | -- | 1.4 | -- | -- | -0.768 | -- | 24.5 | 388 | -- | -- |
| 189.94 | 0.643 | 8.6 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.87 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 76 | 66.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 109 | 67.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 113 | 67.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 114 | 67.14 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 118 | 67.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 132 | 67.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 146 | 67.74 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 185 | 68.23 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 198 | 68.36 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 200 | 68.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 210 | 68.49 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 243 | 68.80 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 245 | 68.83 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 249 | 68.84 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 252 | 68.87 | temperature | 20.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 261 | 68.91 | temperature | 25.0 | 30 | > th | dose dependent | no | NA | NA |
| 267 | 68.92 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 295 | 69.02 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 311 | 69.09 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 313 | 69.09 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 318 | 69.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 321 | 69.11 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 339 | 69.21 | temperature | 10.0 | 30 | > th | dose dependent | no | NA | NA |
| 354 | 69.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 464 | 69.63 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 472 | 69.64 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 475 | 69.65 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 482 | 69.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 556 | 69.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 571 | 69.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 608 | 69.95 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 648 | 70.04 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 696 | 70.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 711 | 70.20 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 21 |
| 713 | 70.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 732 | 70.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 751 | 70.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 767 | 70.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 788 | 70.40 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 857 | 70.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 893 | 70.62 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 944 | 70.69 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 996 | 70.76 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |