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Os12g0171200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TRNA nucleotidyltransferase (EC 2.7.7.25).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0159) R2 : 0.124
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.268 (0.0335) R2dN8 : 0.16 R2N8 : 0.124
σ : 0.299
deviance : 41.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.9 0.261 10.9 0.0791 0.472 -0.344 0.455 -0.617 -0.293 18.7 30.61 634 -- --
30.91 0.259 10.9 0.121 0.469 -0.39 0.416 -- -0.284 18.6 30.9 604 -- --
31.36 0.261 10.9 0.0704 0.459 -0.303 -- -0.591 -0.292 18.7 30.83 677 -- --
31.38 0.261 10.9 0.119 0.462 -0.373 -- -- -0.288 18.7 30.9 643 -- --
37.82 0.286 10.9 0.0701 -- -0.222 -- -0.407 -0.31 -- 30.6 2714 -- --
34.25 0.274 10.9 0.0729 0.357 -- 0.195 -- -0.255 18.7 -- -- -- --
34.35 0.274 10.9 0.0697 0.358 -- -- -- -0.254 18.7 -- -- -- --
37.03 0.283 10.9 0.142 -- -0.296 -- -- -0.315 -- 31.19 5621 -- --
31.74 0.262 10.9 -- 0.456 -0.354 -- -- -0.299 18.7 30.8 640 -- --
41.02 0.299 10.9 0.0614 -- -- -- -- -0.261 -- -- -- -- --
34.47 0.275 10.9 -- 0.357 -- -- -- -0.262 18.7 -- -- -- --
37.49 0.285 10.9 -- -- -0.246 -- -- -0.304 -- 31 5642 -- --
41.12 0.299 10.9 -- -- -- -- -- -0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.45 temperature 15.0 10 > th dose dependent rect. 15 18
12 28.78 temperature 10.0 270 > th dose dependent rect. 12 20
16 28.85 temperature 30.0 270 < th dose independent rect. 7 20
20 28.96 temperature 30.0 270 < th dose independent rect. 17 10
22 28.98 atmosphere 1015.0 10 < th dose dependent rect. 16 17
40 29.21 humidity 70.0 270 > th dose independent rect. 17 10
43 29.23 temperature 15.0 30 > th dose dependent rect. 12 21
49 29.30 temperature 10.0 270 > th dose dependent rect. 12 10
60 29.41 radiation 1.0 270 < th dose dependent rect. 17 10
69 29.48 radiation 1.0 270 < th dose independent rect. 17 10
72 29.49 humidity 50.0 270 > th dose independent rect. 7 20
73 29.49 temperature 10.0 270 > th dose dependent rect. 3 4
78 29.50 temperature 15.0 30 > th dose dependent rect. 3 6
81 29.51 temperature 10.0 270 > th dose dependent rect. 1 7
96 29.56 radiation 10.0 30 > th dose independent rect. 9 6
120 29.64 atmosphere 995.0 10 > th dose independent rect. 9 7
121 29.64 temperature 25.0 10 > th dose independent rect. 1 8
138 29.67 radiation 40.0 10 < th dose independent rect. 16 17
144 29.70 temperature 10.0 10 > th dose independent rect. 9 7
146 29.70 atmosphere 1015.0 10 < th dose independent rect. 9 7
147 29.70 precipitation 0.1 10 < th dose independent rect. 9 7
149 29.70 temperature 10.0 10 > th dose independent rect. 16 17
150 29.70 precipitation 0.1 10 < th dose dependent rect. 9 7
154 29.71 precipitation 0.1 10 < th dose independent rect. 16 17
156 29.71 precipitation 0.1 10 < th dose dependent rect. 16 17
161 29.73 humidity 90.0 10 < th dose independent rect. 4 5
162 29.73 radiation 30.0 90 < th dose independent rect. 3 6
167 29.75 radiation 30.0 90 < th dose independent rect. 3 8
169 29.75 radiation 1.0 270 < th dose dependent rect. 5 22
170 29.76 temperature 20.0 270 > th dose independent rect. 3 4
171 29.76 wind 9.0 10 < th dose independent rect. 9 7
181 29.78 wind 1.0 30 > th dose independent rect. 9 7
186 29.78 wind 9.0 10 < th dose independent rect. 16 17
202 29.81 temperature 20.0 10 > th dose dependent rect. 1 8
208 29.82 atmosphere 995.0 30 > th dose dependent rect. 9 19
210 29.83 wind 1.0 30 > th dose independent rect. 4 5
212 29.83 atmosphere 995.0 270 > th dose dependent rect. 18 9
213 29.83 atmosphere 1015.0 270 < th dose dependent rect. 12 9
225 29.85 radiation 30.0 90 < th dose independent rect. 13 20
231 29.86 humidity 50.0 270 > th dose independent rect. 8 17
235 29.86 temperature 10.0 270 > th dose dependent rect. 3 16
248 29.88 atmosphere 995.0 10 > th dose independent rect. 16 17
257 29.89 atmosphere 1005.0 270 > th dose independent rect. 8 18
268 29.91 temperature 20.0 270 > th dose independent rect. 12 20
270 29.91 radiation 30.0 30 < th dose independent rect. 12 23
284 29.93 radiation 1.0 10 > th dose dependent rect. 9 6
295 29.95 precipitation 0.1 270 < th dose independent rect. 3 15
297 29.95 atmosphere 1015.0 10 < th dose independent rect. 16 17
299 29.95 radiation 1.0 270 < th dose independent rect. 6 21
300 29.95 temperature 15.0 270 > th dose dependent rect. 4 2
303 29.95 precipitation 0.1 270 < th dose dependent rect. 3 15
315 29.99 humidity 70.0 270 > th dose independent rect. 3 4
318 29.99 radiation 40.0 90 < th dose independent rect. 4 16
322 29.99 radiation 30.0 270 < th dose dependent rect. 3 4
328 30.00 wind 9.0 270 < th dose independent rect. 7 20
335 30.01 atmosphere 995.0 270 > th dose independent rect. 18 9
341 30.01 temperature 15.0 30 > th dose dependent rect. 12 23
342 30.02 humidity 70.0 90 > th dose independent rect. 3 6
346 30.02 radiation 1.0 90 > th dose independent rect. 15 17
351 30.03 wind 9.0 270 < th dose independent rect. 18 9
356 30.04 temperature 10.0 1440 > th dose independent rect. 5 5
359 30.04 atmosphere 995.0 1440 > th dose independent rect. 5 5
360 30.04 atmosphere 1015.0 1440 < th dose independent rect. 5 5
363 30.04 temperature 10.0 270 > th dose independent rect. 18 9
369 30.04 temperature 10.0 270 > th dose independent rect. 3 15
370 30.04 atmosphere 1015.0 270 < th dose independent rect. 3 15
371 30.04 temperature 10.0 1440 > th dose independent rect. 10 19
379 30.05 wind 9.0 270 < th dose independent rect. 3 4
380 30.05 temperature 10.0 270 > th dose independent rect. 3 4
382 30.05 temperature 30.0 270 < th dose independent rect. 3 4
383 30.05 humidity 50.0 270 > th dose independent rect. 3 4
385 30.05 atmosphere 995.0 270 > th dose independent rect. 3 4
386 30.05 atmosphere 1015.0 270 < th dose independent rect. 3 4
389 30.05 precipitation 0.1 270 < th dose independent rect. 3 4
390 30.05 temperature 20.0 270 > th dose independent rect. 2 6
395 30.05 temperature 10.0 1440 > th dose independent rect. 10 6
406 30.05 temperature 10.0 1440 > th dose independent rect. 16 18
409 30.05 temperature 10.0 270 > th dose independent rect. 7 20
411 30.05 precipitation 0.1 270 < th dose dependent rect. 3 4
421 30.06 radiation 1.0 270 > th dose dependent rect. 9 1
438 30.07 wind 9.0 270 < th dose dependent rect. 7 20
440 30.08 atmosphere 1005.0 270 > th dose independent rect. 16 10
454 30.09 wind 1.0 90 > th dose independent rect. 9 18
487 30.12 atmosphere 995.0 270 > th dose independent rect. 7 20
489 30.12 temperature 10.0 10 > th dose dependent rect. 9 6
493 30.13 temperature 30.0 90 < th dose independent rect. 3 6
500 30.13 precipitation 0.1 270 < th dose independent rect. 18 9
505 30.13 precipitation 0.1 270 < th dose dependent rect. 18 9
521 30.15 radiation 1.0 90 > th dose independent sin 12 NA
527 30.15 radiation 1.0 270 > th dose dependent rect. 8 4
542 30.17 wind 9.0 90 < th dose independent rect. 9 18
546 30.17 precipitation 0.1 270 < th dose independent rect. 7 20
547 30.17 temperature 20.0 30 > th dose independent rect. 12 21
549 30.17 precipitation 0.1 270 < th dose dependent rect. 7 20
554 30.18 precipitation 0.1 90 < th dose independent rect. 3 6
556 30.18 temperature 20.0 270 > th dose independent rect. 12 8
569 30.18 precipitation 0.1 90 < th dose dependent rect. 3 6
572 30.18 humidity 50.0 270 > th dose dependent rect. 17 10
583 30.19 wind 7.0 90 < th dose independent rect. 3 6
600 30.20 temperature 10.0 90 > th dose independent rect. 3 6
603 30.20 atmosphere 995.0 90 > th dose independent rect. 3 6
604 30.20 atmosphere 1015.0 90 < th dose independent rect. 3 6
605 30.20 humidity 70.0 270 > th dose independent rect. 1 7
607 30.20 temperature 10.0 90 > th dose independent rect. 9 18
638 30.23 wind 9.0 270 < th dose independent rect. 3 15
640 30.23 atmosphere 995.0 90 > th dose independent rect. 9 18
641 30.23 radiation 1.0 90 < th dose dependent sin 12 NA
643 30.23 humidity 50.0 270 > th dose dependent rect. 3 4
644 30.23 radiation 40.0 10 < th dose dependent rect. 6 14
658 30.25 radiation 20.0 720 > th dose independent rect. 16 15
662 30.25 radiation 30.0 720 > th dose independent rect. 15 17
674 30.26 wind 5.0 270 < th dose independent rect. 7 20
682 30.27 radiation 1.0 90 < th dose independent sin 12 NA
704 30.28 wind 3.0 270 > th dose independent rect. 12 8
713 30.28 radiation 1.0 90 > th dose dependent rect. 8 7
738 30.30 radiation 1.0 270 > th dose independent rect. 13 18
754 30.31 precipitation 0.1 90 < th dose independent rect. 9 18
763 30.31 precipitation 0.1 90 < th dose dependent rect. 9 18
765 30.32 wind 1.0 270 > th dose independent rect. 3 4
852 30.36 precipitation 0.1 270 < th dose independent rect. 1 7
866 30.36 precipitation 0.1 270 < th dose dependent rect. 1 7
868 30.37 humidity 90.0 270 < th dose independent rect. 9 1
882 30.37 temperature 10.0 270 > th dose independent rect. 1 7
884 30.37 temperature 30.0 270 < th dose independent rect. 1 7
885 30.37 humidity 50.0 270 > th dose independent rect. 1 7
887 30.37 atmosphere 995.0 270 > th dose independent rect. 1 7
888 30.37 atmosphere 1015.0 270 < th dose independent rect. 1 7
901 30.38 humidity 80.0 10 < th dose independent rect. 9 6
902 30.38 wind 7.0 270 < th dose independent rect. 1 7
912 30.38 humidity 90.0 10 < th dose dependent rect. 9 6
936 30.39 humidity 50.0 10 > th dose independent rect. 16 17
946 30.40 radiation 10.0 270 > th dose independent rect. 9 1
953 30.40 radiation 1.0 14400 > th dose independent rect. 18 12
962 30.40 radiation 40.0 270 < th dose dependent rect. 1 8
988 30.42 temperature 30.0 720 > th dose independent rect. 15 1