Os12g0170500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0170500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.92	(0.0376)	R²	:	0.0214
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.5	(0.604)	R²_dE	:	0.0154	R²_E	:	0.0158
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.114	(0.0792)	R²_dN8	:	0.00561	R²_N8	:	0.00597
σ	:	0.674
deviance	:	208.33
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	90
memory length	:	30
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	13
open length of G	:	3.32

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
198.45	0.662	2.93	-0.17	0.0293	6.88	-1.13	-24.4	-0.122	19.8	90	30	13	3.32
204.25	0.671	2.92	-0.107	0.0277	4.51	-1.18	--	-0.121	19.5	90	30	13	3.32
202.16	0.662	2.93	-0.14	0.0296	6.73	--	-23.9	-0.123	19.9	89.96	30	13	3.26
208.11	0.676	2.92	-0.0796	0.0296	4.51	--	--	-0.123	21.5	90	30	13	3.32
202.21	0.662	2.93	-0.14	--	6.74	--	-23.9	-0.124	--	89.96	30	13	3.9
229.51	0.71	2.92	-0.104	0.0384	--	-1.17	--	-0.139	19.6	--	--	--	--
233.22	0.715	2.92	-0.0742	0.0568	--	--	--	-0.14	16.6	--	--	--	--
208.16	0.675	2.92	-0.0793	--	4.5	--	--	-0.123	--	90	30	13	3.32
208.28	0.676	2.92	--	0.0295	4.51	--	--	-0.114	21.3	90	30	13	3.32
233.39	0.714	2.92	-0.0763	--	--	--	--	-0.142	--	--	--	--	--
233.36	0.715	2.92	--	0.0582	--	--	--	-0.132	16.6	--	--	--	--
208.33	0.674	2.92	--	--	4.5	--	--	-0.114	--	90	30	13	3.32
233.54	0.713	2.92	--	--	--	--	--	-0.133	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	198.45	humidity	90.0	30	> th	dose independent	rect.	13	1
11	198.45	humidity	90.0	30	> th	dose dependent	rect.	13	1
41	200.27	wind	1.0	90	< th	dose dependent	rect.	12	1
46	205.46	wind	1.0	90	< th	dose independent	rect.	12	1
52	211.63	radiation	10.0	10	< th	dose dependent	rect.	14	1
99	216.28	temperature	15.0	1440	> th	dose independent	rect.	13	1
100	216.46	radiation	10.0	30	< th	dose dependent	rect.	12	3
103	216.53	atmosphere	1000.0	10	< th	dose independent	rect.	1	1
110	216.53	atmosphere	1000.0	10	< th	dose dependent	rect.	1	1
120	216.72	wind	1.0	270	< th	dose dependent	rect.	10	11
137	217.25	wind	1.0	270	< th	dose dependent	rect.	10	9
153	217.84	temperature	15.0	90	> th	dose independent	rect.	13	23
157	218.23	humidity	60.0	30	> th	dose dependent	rect.	12	2
161	218.39	temperature	15.0	10	> th	dose independent	rect.	14	22
169	218.74	radiation	10.0	10	< th	dose independent	rect.	14	1
171	218.77	radiation	1.0	90	> th	dose dependent	rect.	18	1
187	219.12	wind	5.0	10	< th	dose independent	rect.	12	2
188	219.13	radiation	10.0	10	< th	dose independent	rect.	11	4
189	219.13	radiation	40.0	90	< th	dose dependent	rect.	12	1
202	219.27	temperature	25.0	10	> th	dose independent	rect.	5	1
211	219.34	temperature	25.0	90	> th	dose independent	rect.	12	1
213	219.34	humidity	80.0	10	< th	dose dependent	rect.	20	1
221	219.39	humidity	80.0	90	< th	dose independent	rect.	19	1
224	219.42	humidity	80.0	10	< th	dose independent	rect.	20	1
226	219.43	temperature	15.0	1440	> th	dose independent	rect.	13	10
232	219.46	wind	7.0	10	< th	dose dependent	rect.	12	2
234	219.54	radiation	20.0	90	< th	dose independent	rect.	12	1
245	219.68	temperature	25.0	90	> th	dose dependent	rect.	12	1
262	220.01	humidity	70.0	90	> th	dose independent	rect.	12	1
268	220.11	temperature	15.0	270	> th	dose independent	rect.	13	12
278	220.20	precipitation	0.1	90	< th	dose independent	rect.	13	23
280	220.20	precipitation	0.1	90	< th	dose dependent	rect.	13	23
297	220.60	humidity	90.0	720	< th	dose independent	rect.	13	5
325	220.96	humidity	80.0	10	< th	dose dependent	rect.	19	11
337	221.04	wind	9.0	90	< th	dose dependent	rect.	12	1
339	221.04	humidity	80.0	10	< th	dose dependent	rect.	19	9
341	221.06	atmosphere	1015.0	90	< th	dose dependent	rect.	12	1
342	221.08	atmosphere	1000.0	90	> th	dose independent	rect.	12	1
350	221.14	precipitation	0.1	720	> th	dose independent	rect.	15	2
360	221.25	precipitation	0.1	720	> th	dose dependent	rect.	15	2
396	221.45	humidity	90.0	1440	< th	dose independent	rect.	13	1
400	221.49	radiation	1.0	90	> th	dose independent	rect.	12	1
434	221.71	atmosphere	1010.0	90	< th	dose independent	rect.	12	1
438	221.76	temperature	10.0	90	> th	dose independent	rect.	12	1
440	221.76	humidity	90.0	90	< th	dose independent	rect.	12	1
443	221.76	precipitation	0.1	90	< th	dose independent	rect.	12	1
445	221.76	precipitation	0.1	90	< th	dose dependent	rect.	12	1
446	221.76	temperature	25.0	270	> th	dose dependent	rect.	10	3
455	221.81	precipitation	0.1	1440	> th	dose independent	rect.	12	2
464	221.84	temperature	15.0	720	> th	dose independent	rect.	11	7
479	221.90	precipitation	0.1	720	> th	dose independent	rect.	12	5
484	221.93	temperature	15.0	720	> th	dose independent	rect.	6	19
496	222.01	temperature	15.0	270	> th	dose independent	rect.	21	12
501	222.02	humidity	90.0	720	> th	dose dependent	rect.	12	6
506	222.04	precipitation	0.1	720	> th	dose dependent	rect.	12	5
513	222.06	atmosphere	995.0	1440	> th	dose independent	rect.	13	1
517	222.06	temperature	10.0	1440	> th	dose independent	rect.	14	23
521	222.07	temperature	30.0	90	< th	dose independent	rect.	12	1
527	222.11	temperature	15.0	10	> th	dose independent	rect.	20	23
535	222.14	temperature	15.0	1440	> th	dose independent	rect.	21	2
536	222.14	temperature	15.0	1440	> th	dose independent	rect.	17	3
547	222.18	radiation	1.0	720	< th	dose dependent	rect.	11	2
577	222.29	temperature	20.0	720	< th	dose dependent	rect.	12	9
580	222.31	wind	1.0	270	< th	dose independent	rect.	10	11
594	222.37	temperature	20.0	720	< th	dose dependent	rect.	13	6
599	222.40	wind	7.0	90	> th	dose independent	rect.	18	1
602	222.40	temperature	20.0	270	< th	dose dependent	rect.	20	1
616	222.44	precipitation	0.1	1440	> th	dose dependent	rect.	12	2
622	222.46	temperature	15.0	1440	< th	dose independent	rect.	23	1
629	222.46	humidity	90.0	720	< th	dose independent	rect.	11	7
637	222.46	temperature	15.0	1440	< th	dose dependent	rect.	23	1
663	222.49	temperature	20.0	720	< th	dose dependent	rect.	17	2
668	222.51	wind	1.0	90	< th	dose dependent	rect.	8	2
678	222.55	temperature	15.0	720	> th	dose independent	rect.	11	14
685	222.57	radiation	1.0	90	> th	dose independent	rect.	18	1
686	222.57	wind	1.0	90	< th	dose independent	rect.	8	2
699	222.58	wind	1.0	90	> th	dose independent	rect.	12	1
708	222.59	temperature	20.0	270	< th	dose dependent	rect.	20	3
713	222.61	humidity	90.0	720	> th	dose dependent	rect.	15	2
716	222.62	temperature	15.0	10	> th	dose independent	rect.	14	14
730	222.66	temperature	15.0	270	> th	dose independent	sin	20	NA
734	222.67	temperature	15.0	10	> th	dose independent	sin	7	NA
771	222.67	temperature	15.0	10	> th	dose independent	sin	1	NA
784	222.67	precipitation	0.1	10	< th	dose independent	rect.	2	10
785	222.67	radiation	40.0	30	> th	dose dependent	rect.	12	2
787	222.67	precipitation	0.1	10	< th	dose dependent	rect.	2	10
795	222.69	temperature	15.0	10	> th	dose independent	rect.	1	23
809	222.72	radiation	40.0	30	> th	dose independent	rect.	12	1
821	222.73	wind	1.0	270	< th	dose independent	rect.	10	9
823	222.73	atmosphere	995.0	90	> th	dose dependent	rect.	12	1
836	222.76	temperature	15.0	720	> th	dose independent	rect.	20	5
839	222.76	temperature	20.0	1440	< th	dose dependent	rect.	12	1
894	222.81	wind	1.0	30	> th	dose dependent	rect.	12	1
907	222.83	temperature	20.0	90	< th	dose dependent	rect.	22	1
955	222.88	precipitation	0.1	720	> th	dose independent	rect.	8	9
969	222.88	precipitation	0.1	1440	> th	dose dependent	rect.	8	9
994	222.89	temperature	15.0	90	> th	dose independent	rect.	20	15