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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0170200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bile acid:sodium symporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0239) R2 : 0.00527
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0783 (0.0504) R2dN8 : 0.00681 R2N8 : 0.00527
σ : 0.451
deviance : 93.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.15 0.44 2.38 -1.69 0.0508 96.3 -0.18 203 0.0935 5.16 15 90 -- --
92.95 0.452 3.22 0.00661 0.0513 0.0116 -0.208 -- 0.0775 7.91 15 18 -- --
89.23 0.44 2.38 -1.68 0.0498 96.4 -- 203 0.0944 5.45 15.01 89 -- --
90.84 0.447 3.21 0.0669 0.0516 -0.69 -- -- 0.0946 7.16 16.03 219 -- --
89.36 0.44 2.38 -1.67 -- 96.4 -- 204 0.0956 -- 15.02 87 -- --
92.95 0.452 3.22 0.00711 0.0514 -- -0.209 -- 0.0777 7.93 -- -- -- --
93.07 0.452 3.22 0.00114 0.0526 -- -- -- 0.0777 7.41 -- -- -- --
90.98 0.446 3.21 0.0679 -- -0.691 -- -- 0.0955 -- 16.03 219 -- --
90.95 0.447 3.22 -- 0.0523 -0.656 -- -- 0.0867 7.09 16.08 68 -- --
93.22 0.451 3.22 0.00198 -- -- -- -- 0.0785 -- -- -- -- --
93.07 0.451 3.22 -- 0.0526 -- -- -- 0.0776 7.41 -- -- -- --
91.1 0.446 3.22 -- -- -0.656 -- -- 0.0875 -- 16.08 68 -- --
93.22 0.451 3.22 -- -- -- -- -- 0.0783 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.13 wind 9.0 30 < th dose independent rect. 3 23
2 79.08 temperature 20.0 30 > th dose dependent rect. 2 1
3 79.09 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 79.15 temperature 20.0 30 > th dose independent rect. 2 1
6 79.15 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 79.24 wind 3.0 30 < th dose independent rect. 2 1
14 79.27 wind 7.0 30 < th dose dependent rect. 2 1
18 79.30 temperature 10.0 30 > th dose independent rect. 2 1
20 79.30 temperature 30.0 30 < th dose independent rect. 2 1
21 79.30 humidity 50.0 30 > th dose independent rect. 2 1
25 79.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 79.30 radiation 1.0 30 < th dose independent rect. 2 1
32 79.30 precipitation 0.1 30 < th dose independent rect. 2 1
33 79.30 temperature 10.0 30 > th dose independent rect. 3 23
34 79.30 radiation 1.0 30 < th dose dependent rect. 2 1
39 79.30 precipitation 0.1 30 < th dose dependent rect. 2 1
40 79.33 humidity 50.0 30 > th dose dependent rect. 2 1
48 79.66 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 79.72 radiation 1.0 43200 < th dose dependent rect. 3 1
52 79.78 temperature 30.0 30 < th dose dependent rect. 2 1
54 79.87 wind 1.0 30 > th dose independent rect. 2 1
74 80.38 wind 9.0 1440 < th dose independent rect. 3 1
75 80.38 temperature 10.0 1440 > th dose independent rect. 3 1
78 80.38 temperature 30.0 1440 < th dose independent rect. 3 1
82 80.38 humidity 50.0 1440 > th dose independent rect. 3 1
91 80.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
92 80.38 radiation 1.0 1440 < th dose independent rect. 3 1
112 80.38 temperature 10.0 1440 > th dose independent rect. 4 23
165 81.59 atmosphere 995.0 30 > th dose independent rect. 3 23
166 81.61 atmosphere 1015.0 720 < th dose independent rect. 3 8
170 81.82 precipitation 0.1 30 < th dose independent rect. 3 23
171 81.82 precipitation 0.1 30 < th dose dependent rect. 3 23
173 81.90 precipitation 0.1 720 < th dose independent rect. 3 8
174 81.90 precipitation 0.1 720 < th dose dependent rect. 3 8
179 82.31 precipitation 0.1 720 < th dose independent rect. 23 16
180 82.31 precipitation 0.1 720 < th dose dependent rect. 23 16
181 82.33 wind 9.0 720 < th dose independent rect. 3 8
195 83.81 temperature 10.0 720 > th dose independent rect. 3 8
196 83.81 atmosphere 995.0 720 > th dose independent rect. 3 8
197 83.81 temperature 10.0 720 > th dose independent rect. 11 16
198 83.87 temperature 10.0 720 > th dose independent rect. 15 8
199 83.87 temperature 10.0 720 > th dose independent rect. 23 16
200 83.88 atmosphere 995.0 720 > th dose independent rect. 11 16
201 83.91 atmosphere 995.0 720 > th dose independent rect. 23 16
202 83.93 atmosphere 995.0 720 > th dose independent rect. 15 8
207 84.09 humidity 50.0 720 > th dose independent rect. 3 8
214 84.77 precipitation 0.1 720 < th dose independent rect. 15 8
215 84.77 precipitation 0.1 720 < th dose dependent rect. 15 8
216 84.79 temperature 10.0 30 > th dose dependent rect. 3 23
218 84.97 wind 9.0 30 < th dose independent rect. 23 23
219 85.03 humidity 50.0 30 > th dose independent rect. 3 23
265 85.90 radiation 40.0 43200 < th dose dependent rect. 23 1
267 85.94 temperature 15.0 90 > th dose dependent rect. 3 16
268 85.96 precipitation 0.1 720 < th dose independent rect. 11 16
269 85.96 precipitation 0.1 720 < th dose dependent rect. 11 16
278 86.26 temperature 25.0 270 > th dose independent rect. 18 9
282 86.41 temperature 10.0 720 > th dose dependent rect. 3 6
283 86.42 atmosphere 1015.0 720 < th dose independent rect. 23 16
286 86.47 temperature 10.0 10 > th dose dependent rect. 4 15
302 86.63 wind 1.0 720 > th dose independent rect. 15 8
305 86.65 atmosphere 1015.0 720 < th dose independent rect. 3 15
309 86.68 temperature 10.0 720 > th dose dependent rect. 3 8
317 86.73 temperature 25.0 30 > th dose independent rect. 22 1
318 86.74 wind 9.0 1440 < th dose independent rect. 23 1
319 86.74 temperature 10.0 1440 > th dose independent rect. 23 1
322 86.74 temperature 30.0 1440 < th dose independent rect. 23 1
326 86.74 humidity 50.0 1440 > th dose independent rect. 23 1
336 86.74 atmosphere 995.0 1440 > th dose independent rect. 23 1
337 86.74 radiation 1.0 1440 < th dose independent rect. 23 1
358 86.74 temperature 10.0 1440 > th dose independent rect. 24 23
361 86.74 radiation 1.0 1440 < th dose dependent rect. 23 1
367 86.76 humidity 90.0 90 < th dose independent rect. 2 1
369 86.80 humidity 80.0 30 > th dose independent rect. 22 1
370 86.80 temperature 20.0 30 > th dose dependent rect. 22 1
371 86.80 atmosphere 1005.0 30 > th dose dependent rect. 22 1
372 86.82 wind 3.0 30 < th dose independent rect. 22 1
380 86.86 atmosphere 1015.0 720 < th dose independent rect. 3 6
382 86.88 atmosphere 1005.0 30 > th dose independent rect. 22 1
397 86.93 wind 1.0 10 > th dose independent rect. 23 23
398 86.93 wind 5.0 30 < th dose dependent rect. 22 1
403 86.95 wind 1.0 30 > th dose independent rect. 22 1
406 86.95 humidity 50.0 30 > th dose dependent rect. 22 1
411 86.96 temperature 10.0 30 > th dose independent rect. 22 1
413 86.96 temperature 30.0 30 < th dose independent rect. 22 1
414 86.96 humidity 50.0 30 > th dose independent rect. 22 1
417 86.96 humidity 90.0 30 < th dose independent rect. 22 1
419 86.96 atmosphere 1010.0 30 < th dose independent rect. 22 1
421 86.96 radiation 1.0 30 < th dose independent rect. 22 1
426 86.96 temperature 10.0 30 > th dose independent rect. 23 23
427 86.96 radiation 1.0 30 < th dose dependent rect. 22 1
433 86.97 precipitation 0.1 30 < th dose independent rect. 22 1
434 86.97 precipitation 0.1 30 < th dose dependent rect. 22 1
435 86.97 radiation 1.0 720 < th dose dependent rect. 24 13
436 86.98 wind 9.0 720 < th dose dependent rect. 1 2
439 87.00 temperature 25.0 270 > th dose independent rect. 22 5
446 87.04 wind 1.0 10 > th dose independent rect. 23 12
462 87.15 wind 9.0 720 < th dose independent rect. 23 16
466 87.16 temperature 30.0 30 < th dose independent rect. 3 23
469 87.19 atmosphere 1015.0 30 < th dose dependent rect. 22 1
475 87.26 temperature 30.0 720 < th dose independent rect. 3 8
476 87.27 wind 1.0 30 > th dose dependent rect. 22 1
477 87.27 humidity 90.0 30 < th dose dependent rect. 22 1
480 87.28 temperature 15.0 720 > th dose independent rect. 3 6
508 87.42 temperature 15.0 720 > th dose dependent rect. 3 1
514 87.43 temperature 30.0 30 < th dose dependent rect. 22 1
519 87.46 temperature 15.0 270 > th dose independent rect. 3 13
522 87.47 temperature 25.0 30 > th dose independent rect. 20 3
528 87.49 temperature 30.0 720 < th dose dependent rect. 24 12
538 87.54 precipitation 0.1 720 < th dose independent rect. 3 22
540 87.54 precipitation 0.1 720 < th dose dependent rect. 3 22
541 87.55 radiation 1.0 720 < th dose independent rect. 24 13
547 87.57 wind 7.0 10 < th dose independent rect. 4 15
561 87.63 temperature 25.0 720 > th dose independent rect. 3 5
573 87.67 atmosphere 1015.0 720 < th dose independent rect. 3 12
609 87.79 temperature 30.0 720 < th dose dependent rect. 1 2
612 87.79 temperature 15.0 30 > th dose dependent rect. 23 21
616 87.81 radiation 40.0 720 < th dose independent rect. 15 8
661 87.88 atmosphere 1000.0 720 > th dose independent rect. 1 2
662 87.88 wind 9.0 720 < th dose independent rect. 15 8
669 87.88 temperature 10.0 30 > th dose dependent rect. 23 23
671 87.89 temperature 15.0 720 > th dose independent rect. 5 10
672 87.89 atmosphere 1015.0 30 < th dose independent rect. 3 23
683 87.94 temperature 10.0 720 > th dose dependent rect. 23 16
689 87.97 radiation 1.0 720 < th dose independent rect. 18 9
696 87.99 temperature 30.0 720 < th dose dependent rect. 7 5
706 88.01 temperature 30.0 10 < th dose dependent rect. 2 12
708 88.02 wind 7.0 720 < th dose independent rect. 1 2
710 88.02 precipitation 0.1 720 < th dose independent rect. 3 15
711 88.02 radiation 1.0 720 > th dose independent rect. 18 21
712 88.02 precipitation 0.1 720 < th dose dependent rect. 3 15
714 88.03 temperature 30.0 720 < th dose dependent rect. 9 2
715 88.03 temperature 25.0 270 > th dose dependent rect. 19 8
717 88.03 temperature 30.0 90 < th dose dependent rect. 1 14
719 88.04 precipitation 0.1 720 < th dose independent rect. 21 18
722 88.04 precipitation 0.1 720 < th dose dependent rect. 21 18
726 88.05 temperature 25.0 90 > th dose dependent rect. 20 3
735 88.07 atmosphere 1015.0 1440 < th dose independent rect. 3 1
749 88.09 temperature 30.0 270 < th dose dependent rect. 7 10
752 88.09 temperature 30.0 270 < th dose dependent rect. 7 12
753 88.10 precipitation 0.1 720 < th dose independent rect. 3 6
758 88.10 precipitation 0.1 720 < th dose dependent rect. 3 6
763 88.11 atmosphere 995.0 720 > th dose independent rect. 15 22
766 88.11 temperature 30.0 90 < th dose dependent rect. 1 12
767 88.12 temperature 10.0 720 > th dose independent rect. 13 2
768 88.12 atmosphere 1015.0 720 < th dose independent rect. 13 2
769 88.12 temperature 10.0 720 > th dose independent rect. 15 22
778 88.13 temperature 30.0 270 < th dose dependent rect. 7 8
782 88.14 atmosphere 995.0 720 > th dose independent rect. 13 2
792 88.16 temperature 10.0 720 > th dose independent rect. 1 2
793 88.16 temperature 30.0 720 < th dose independent rect. 1 2
794 88.16 humidity 50.0 720 > th dose independent rect. 1 2
798 88.16 radiation 1.0 720 < th dose independent rect. 1 2
805 88.16 radiation 1.0 720 < th dose dependent rect. 1 2
817 88.17 atmosphere 995.0 720 > th dose independent rect. 3 22
818 88.17 temperature 30.0 270 < th dose dependent sin 2 NA
820 88.17 temperature 20.0 30 > th dose dependent rect. 20 7
825 88.18 temperature 30.0 720 < th dose dependent rect. 5 7
828 88.19 atmosphere 1015.0 1440 < th dose independent rect. 17 3
829 88.19 atmosphere 1015.0 1440 < th dose independent rect. 15 5
831 88.19 radiation 1.0 720 > th dose independent rect. 5 10
833 88.19 precipitation 0.1 720 < th dose independent rect. 12 23
835 88.19 temperature 25.0 270 > th dose dependent rect. 22 5
837 88.19 radiation 1.0 720 < th dose dependent rect. 18 9
839 88.19 precipitation 0.1 720 < th dose dependent rect. 12 23
847 88.21 temperature 10.0 270 > th dose dependent sin 2 NA
852 88.22 precipitation 0.1 720 < th dose independent rect. 13 2
853 88.22 temperature 25.0 720 < th dose independent rect. 1 10
854 88.22 precipitation 0.1 720 < th dose dependent rect. 13 2
891 88.26 wind 1.0 10 > th dose independent rect. 23 8
909 88.28 wind 1.0 720 > th dose independent rect. 13 2
914 88.29 wind 9.0 720 < th dose independent rect. 13 2
967 88.32 wind 9.0 30 < th dose dependent rect. 3 23
973 88.33 temperature 15.0 720 > th dose dependent rect. 23 12
987 88.36 radiation 10.0 30 < th dose independent rect. 3 23
989 88.36 temperature 10.0 720 > th dose dependent rect. 23 10
991 88.36 temperature 15.0 30 > th dose dependent rect. 3 19
993 88.37 precipitation 0.1 720 < th dose independent rect. 1 2
994 88.37 precipitation 0.1 720 < th dose dependent rect. 1 2