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Os12g0170100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0202) R2 : 0.432
β1 : 0.871 (0.074) R2dD : 0.179 R2D : 0.162
β2 : 0.773 (0.0527) R2dC : 0.269 R2C : 0.258
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0628 (0.0432) R2dN8 : 0.00353 R2N8 : -0.00796
σ : 0.38
deviance : 65.9
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.32 0.353 11.6 0.856 0.778 0.739 0.871 0.721 0.062 19.4 5.975 10 -- --
57.29 0.353 11.6 0.875 0.773 0.683 0.673 -- 0.0633 19.1 5.971 10 -- --
58.12 0.355 11.6 0.849 0.776 0.7 -- 0.402 0.0654 19.2 6.07 9 -- --
58.48 0.356 11.6 0.862 0.776 0.694 -- -- 0.0642 19.2 5.68 10 -- --
75.67 0.405 11.6 0.827 -- 0.702 -- 0.479 -0.00178 -- -23.08 702 -- --
64.8 0.377 11.6 0.873 0.769 -- 0.669 -- 0.0598 17.5 -- -- -- --
65.9 0.38 11.6 0.871 0.773 -- -- -- 0.0628 17.5 -- -- -- --
75.53 0.405 11.6 0.807 -- 0.77 -- -- -0.03 -- -41.22 715 -- --
78.04 0.411 11.6 -- 0.768 0.71 -- -- -0.0318 19.3 6.049 10 -- --
96.99 0.46 11.6 0.845 -- -- -- -- 0.0439 -- -- -- -- --
85.89 0.434 11.6 -- 0.758 -- -- -- -0.0342 17.5 -- -- -- --
92.69 0.448 11.6 -- -- 0.798 -- -- -0.122 -- -63.73 718 -- --
115.82 0.502 11.6 -- -- -- -- -- -0.0499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.26 wind 5.0 90 < th dose independent rect. 3 5
2 47.39 radiation 30.0 90 < th dose independent rect. 3 6
3 47.58 radiation 40.0 90 < th dose independent rect. 13 19
4 47.61 precipitation 0.1 90 < th dose independent rect. 8 7
5 47.61 precipitation 0.1 90 < th dose dependent rect. 8 7
6 47.62 temperature 10.0 90 > th dose dependent rect. 3 5
7 47.67 precipitation 0.1 90 < th dose independent rect. 8 19
8 47.67 precipitation 0.1 90 < th dose dependent rect. 8 19
9 47.71 precipitation 0.1 90 < th dose independent rect. 3 5
10 47.71 precipitation 0.1 90 < th dose dependent rect. 3 5
11 47.76 temperature 10.0 90 > th dose independent rect. 8 7
12 47.76 atmosphere 1015.0 90 < th dose independent rect. 8 7
13 47.76 temperature 10.0 90 > th dose independent rect. 15 17
15 47.82 radiation 1.0 90 > th dose independent rect. 8 7
17 47.89 temperature 10.0 90 > th dose independent rect. 3 5
19 47.89 temperature 30.0 90 < th dose independent rect. 3 5
20 47.89 humidity 50.0 90 > th dose independent rect. 3 5
22 47.89 atmosphere 995.0 90 > th dose independent rect. 3 5
23 47.89 atmosphere 1015.0 90 < th dose independent rect. 3 5
24 47.89 atmosphere 995.0 90 > th dose independent rect. 8 7
25 47.89 temperature 10.0 90 > th dose independent rect. 8 19
26 47.91 wind 5.0 270 < th dose independent rect. 1 6
27 47.92 radiation 1.0 10 > th dose independent rect. 9 5
29 47.94 radiation 40.0 90 < th dose independent rect. 15 17
31 47.98 wind 9.0 90 < th dose independent rect. 8 19
33 48.05 wind 5.0 270 < th dose independent rect. 3 3
34 48.05 temperature 10.0 10 > th dose dependent rect. 3 6
37 48.09 wind 9.0 90 < th dose independent rect. 8 7
41 48.17 humidity 50.0 270 > th dose independent rect. 9 1
42 48.17 temperature 10.0 10 > th dose independent rect. 9 5
44 48.17 atmosphere 995.0 10 > th dose independent rect. 9 5
45 48.17 atmosphere 1015.0 10 < th dose independent rect. 9 5
46 48.17 precipitation 0.1 10 < th dose independent rect. 9 5
48 48.17 temperature 10.0 10 > th dose independent rect. 14 19
49 48.17 precipitation 0.1 10 < th dose dependent rect. 9 5
50 48.18 wind 9.0 90 < th dose dependent rect. 3 5
51 48.19 wind 9.0 90 < th dose independent rect. 15 17
66 48.27 temperature 10.0 270 > th dose independent rect. 9 1
67 48.27 atmosphere 995.0 270 > th dose independent rect. 9 1
68 48.27 atmosphere 1015.0 270 < th dose independent rect. 9 1
69 48.27 temperature 10.0 270 > th dose independent rect. 10 23
70 48.29 precipitation 0.1 270 < th dose independent rect. 9 1
71 48.29 precipitation 0.1 270 < th dose dependent rect. 9 1
72 48.30 wind 9.0 270 < th dose independent rect. 9 1
79 48.38 precipitation 0.1 270 < th dose independent rect. 1 6
80 48.38 radiation 20.0 270 < th dose independent rect. 1 7
81 48.38 precipitation 0.1 270 < th dose dependent rect. 1 6
83 48.40 precipitation 0.1 10 < th dose independent rect. 9 18
85 48.40 precipitation 0.1 10 < th dose dependent rect. 9 18
88 48.41 wind 1.0 90 > th dose independent rect. 8 7
95 48.44 precipitation 0.1 270 < th dose independent rect. 3 3
98 48.44 precipitation 0.1 10 < th dose independent rect. 3 6
99 48.44 precipitation 0.1 270 < th dose dependent rect. 3 3
100 48.44 precipitation 0.1 10 < th dose dependent rect. 3 6
102 48.46 atmosphere 995.0 90 > th dose independent rect. 8 19
110 48.50 radiation 40.0 10 < th dose independent rect. 12 21
113 48.52 radiation 40.0 10 < th dose independent rect. 14 19
132 48.58 wind 1.0 30 > th dose independent rect. 9 5
134 48.58 temperature 10.0 270 > th dose dependent rect. 3 3
135 48.59 wind 9.0 10 < th dose independent rect. 9 5
136 48.59 temperature 10.0 1440 > th dose independent rect. 10 5
139 48.59 temperature 10.0 1440 > th dose independent rect. 15 19
143 48.62 wind 9.0 10 < th dose independent rect. 14 19
156 48.65 temperature 10.0 270 > th dose independent rect. 1 6
158 48.65 temperature 30.0 270 < th dose independent rect. 1 6
159 48.65 humidity 50.0 270 > th dose independent rect. 1 6
161 48.65 atmosphere 995.0 270 > th dose independent rect. 1 6
162 48.65 atmosphere 1015.0 270 < th dose independent rect. 1 6
166 48.65 wind 9.0 270 < th dose independent rect. 6 21
180 48.70 wind 1.0 270 > th dose independent rect. 9 1
184 48.71 atmosphere 995.0 90 > th dose independent rect. 15 17
187 48.73 atmosphere 1010.0 270 < th dose independent rect. 3 3
189 48.73 temperature 10.0 10 > th dose independent rect. 3 6
191 48.73 temperature 30.0 10 < th dose independent rect. 3 6
192 48.73 humidity 50.0 10 > th dose independent rect. 3 6
194 48.73 atmosphere 995.0 10 > th dose independent rect. 3 6
195 48.73 atmosphere 1015.0 10 < th dose independent rect. 3 6
197 48.73 temperature 10.0 10 > th dose independent rect. 9 18
200 48.76 temperature 10.0 270 > th dose independent rect. 3 3
202 48.76 temperature 30.0 270 < th dose independent rect. 3 3
203 48.76 humidity 50.0 270 > th dose independent rect. 3 3
206 48.76 atmosphere 995.0 270 > th dose independent rect. 3 3
208 48.76 radiation 20.0 270 < th dose independent rect. 3 3
211 48.76 temperature 10.0 270 > th dose independent rect. 6 21
214 48.77 precipitation 0.1 90 < th dose independent rect. 15 17
215 48.77 precipitation 0.1 90 < th dose dependent rect. 15 17
221 48.80 radiation 40.0 270 < th dose dependent rect. 3 3
224 48.81 radiation 1.0 270 > th dose independent rect. 9 1
255 48.85 radiation 40.0 270 < th dose dependent rect. 1 7
257 48.86 precipitation 0.1 10 < th dose independent rect. 14 19
259 48.86 precipitation 0.1 10 < th dose dependent rect. 14 19
260 48.87 radiation 1.0 270 < th dose dependent rect. 3 2
261 48.87 wind 9.0 270 < th dose dependent rect. 3 3
287 49.02 wind 9.0 270 < th dose independent rect. 17 10
288 49.02 wind 9.0 10 < th dose independent rect. 9 18
292 49.03 radiation 10.0 270 < th dose independent rect. 17 10
294 49.03 atmosphere 995.0 10 > th dose independent rect. 14 19
300 49.05 radiation 40.0 270 < th dose dependent rect. 17 10
301 49.06 humidity 50.0 270 > th dose independent rect. 7 6
312 49.09 precipitation 0.1 270 < th dose independent rect. 3 14
314 49.09 wind 9.0 10 < th dose dependent rect. 3 6
315 49.09 precipitation 0.1 270 < th dose dependent rect. 3 14
317 49.10 temperature 10.0 270 > th dose independent rect. 17 10
321 49.10 temperature 10.0 270 > th dose independent rect. 3 14
322 49.10 atmosphere 1015.0 270 < th dose independent rect. 3 14
339 49.12 precipitation 0.1 270 < th dose independent rect. 6 21
342 49.12 precipitation 0.1 270 < th dose dependent rect. 6 21
347 49.15 atmosphere 995.0 10 > th dose independent rect. 9 18
392 49.26 atmosphere 1015.0 10 < th dose independent rect. 14 19
402 49.33 temperature 10.0 1440 > th dose independent rect. 4 6
405 49.33 atmosphere 995.0 1440 > th dose independent rect. 4 6
406 49.33 atmosphere 1015.0 1440 < th dose independent rect. 4 6
407 49.33 temperature 10.0 1440 > th dose independent rect. 10 18
437 49.38 wind 9.0 270 < th dose dependent rect. 1 6
454 49.44 precipitation 0.1 270 < th dose independent rect. 17 10
455 49.44 atmosphere 1015.0 90 < th dose independent rect. 15 17
457 49.44 precipitation 0.1 270 < th dose dependent rect. 17 10
492 49.51 humidity 50.0 270 > th dose independent rect. 17 10
564 49.64 radiation 40.0 90 < th dose independent rect. 3 16
565 49.64 radiation 40.0 10 < th dose independent rect. 4 16
567 49.64 humidity 50.0 270 > th dose dependent rect. 3 2
572 49.65 temperature 10.0 10 > th dose dependent rect. 9 5
574 49.66 humidity 90.0 90 < th dose independent rect. 8 7
577 49.66 wind 9.0 270 < th dose independent rect. 3 14
580 49.67 atmosphere 995.0 270 > th dose independent rect. 18 9
582 49.67 humidity 50.0 90 > th dose independent rect. 15 17
584 49.67 atmosphere 995.0 90 > th dose dependent rect. 3 5
598 49.74 temperature 10.0 270 > th dose dependent rect. 9 1
601 49.75 humidity 90.0 10 < th dose independent rect. 9 6
636 49.83 radiation 1.0 270 > th dose independent rect. 8 3
643 49.85 humidity 50.0 90 > th dose independent rect. 8 19
682 49.91 temperature 10.0 90 > th dose dependent rect. 8 6
683 49.91 atmosphere 995.0 10 > th dose dependent rect. 3 6
702 49.95 humidity 50.0 10 > th dose independent rect. 15 18
721 50.00 wind 9.0 270 < th dose independent rect. 11 21
779 50.08 precipitation 0.1 270 < th dose independent rect. 11 21
783 50.08 precipitation 0.1 270 < th dose dependent rect. 11 21
785 50.09 atmosphere 1015.0 90 < th dose independent rect. 8 19
786 50.09 wind 9.0 270 < th dose dependent rect. 8 2
825 50.19 wind 1.0 270 > th dose independent rect. 3 2
914 50.31 wind 9.0 270 < th dose dependent rect. 7 6
951 50.39 atmosphere 995.0 270 > th dose independent rect. 6 21
960 50.42 temperature 30.0 270 < th dose independent rect. 18 9
970 50.44 wind 1.0 270 > th dose independent rect. 1 6
997 50.48 wind 1.0 90 > th dose independent rect. 8 19