Os12g0169600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0169600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.08 | 0.764 | 11.1 | -2.2 | 2.36 | 3.64 | 3.72 | -1.23 | 0.347 | 3.99 | 19.5 | 270 | 3.96 | 8.8 |
| 267.74 | 0.762 | 11.1 | -2.15 | 2.42 | 3.91 | 4.24 | -- | 0.353 | 3.43 | 19.42 | 268 | 3.9 | 8.82 |
| 296.57 | 0.802 | 11.1 | -2.29 | 2.42 | 3.68 | -- | -2.29 | 0.289 | 3.88 | 19.39 | 270 | 3.98 | 8.89 |
| 321.93 | 0.836 | 11.1 | -2.23 | 2.42 | 3.72 | -- | -- | 0.335 | 3.71 | 19.35 | 267 | 3.93 | 8.91 |
| 417.71 | 0.952 | 11.1 | -2.21 | -- | 3.72 | -- | -1.13 | 0.293 | -- | 19.4 | 327 | 1.55 | 9.68 |
| 519.68 | 1.07 | 11 | -1.92 | 3.89 | -- | 0.643 | -- | 0.496 | 8.39 | -- | -- | -- | -- |
| 520.95 | 1.07 | 11 | -1.9 | 3.89 | -- | -- | -- | 0.496 | 8.41 | -- | -- | -- | -- |
| 428.24 | 0.964 | 11.1 | -2.31 | -- | 3.7 | -- | -- | 0.205 | -- | 19.3 | 326 | 1.55 | 9.52 |
| 451.39 | 0.99 | 11 | -- | 2.28 | 3.49 | -- | -- | 0.634 | 4.02 | 19.37 | 257 | 4.02 | 8.87 |
| 1362.58 | 1.72 | 11.1 | -1.88 | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
| 616.33 | 1.16 | 10.9 | -- | 3.88 | -- | -- | -- | 0.708 | 8.45 | -- | -- | -- | -- |
| 564.05 | 1.11 | 11.1 | -- | -- | 3.57 | -- | -- | 0.576 | -- | 18.6 | 339 | 1.55 | 9.45 |
| 1455.99 | 1.78 | 11 | -- | -- | -- | -- | -- | 0.744 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 272.44 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 9 |
| 5 | 291.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 8 | 297.56 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 17 | 308.17 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 32 | 314.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 57 | 324.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 62 | 326.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 65 | 326.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 68 | 327.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 20 |
| 70 | 328.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 71 | 328.62 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 20 |
| 89 | 331.25 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 18 |
| 107 | 333.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 118 | 334.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 143 | 336.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 185 | 340.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 195 | 340.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 247 | 345.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 264 | 346.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 288 | 347.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 316 | 348.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 345 | 350.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 375 | 351.94 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 401 | 353.23 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 18 |
| 411 | 353.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 473 | 355.89 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 509 | 357.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 537 | 357.87 | temperature | 20 | 270 | > th | dose independent | sin | 5 | NA |
| 541 | 358.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 609 | 360.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 612 | 360.50 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 16 |
| 637 | 361.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 673 | 362.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 689 | 362.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 733 | 363.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 789 | 365.30 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 802 | 365.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 809 | 365.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 811 | 365.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 815 | 365.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 850 | 366.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 863 | 367.25 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 934 | 368.88 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 8 |
| 947 | 369.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 959 | 369.49 | temperature | 10 | 43200 | > th | dose independent | rect. | 15 | 5 |