Os12g0168700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os12g0168700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.36 | 0.227 | 14.1 | -0.0954 | 0.595 | -0.52 | 0.549 | 1.76 | -0.145 | 4.49 | 21.34 | 3931 | -- | -- |
| 26.2 | 0.238 | 14.2 | -0.282 | 0.599 | -0.907 | 1.01 | -- | -0.221 | 4.64 | 19.4 | 10517 | -- | -- |
| 24.16 | 0.229 | 14.1 | -0.0893 | 0.595 | -0.526 | -- | 1.78 | -0.14 | 4.43 | 21.35 | 3930 | -- | -- |
| 26.86 | 0.241 | 14.2 | -0.296 | 0.583 | -0.93 | -- | -- | -0.234 | 4.5 | 19.44 | 9813 | -- | -- |
| 43.22 | 0.306 | 14.1 | -0.0273 | -- | -0.466 | -- | 1.93 | -0.118 | -- | 21.7 | 3932 | -- | -- |
| 40.64 | 0.299 | 14.2 | -0.943 | 0.572 | -- | 0.682 | -- | -0.48 | 4.62 | -- | -- | -- | -- |
| 41.87 | 0.303 | 14.2 | -0.947 | 0.576 | -- | -- | -- | -0.484 | 4.57 | -- | -- | -- | -- |
| 43.68 | 0.308 | 14.2 | 0.135 | -- | -1.2 | -- | -- | -0.165 | -- | 16.42 | 28895 | -- | -- |
| 26.66 | 0.24 | 14.2 | -- | 0.594 | -0.991 | -- | -- | -0.202 | 4.43 | 18.5 | 22786 | -- | -- |
| 59.57 | 0.361 | 14.2 | -0.925 | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
| 65.53 | 0.379 | 14.2 | -- | 0.559 | -- | -- | -- | -0.378 | 4.62 | -- | -- | -- | -- |
| 43.82 | 0.308 | 14.2 | -- | -- | -1.12 | -- | -- | -0.194 | -- | 16.4 | 29179 | -- | -- |
| 82.14 | 0.423 | 14.2 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 22.62 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 22.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 13 | 22.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 14 | 22.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 15 | 22.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 16 | 22.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 17 | 22.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 58 | 23.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 72 | 23.35 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 79 | 23.37 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 80 | 23.37 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 103 | 23.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 112 | 23.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 145 | 23.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 162 | 23.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 185 | 23.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 186 | 23.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 220 | 23.62 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 244 | 23.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 19 |
| 256 | 23.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 16 |
| 263 | 23.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 279 | 23.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 17 |
| 580 | 23.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 21 |
| 589 | 23.75 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 590 | 23.75 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 594 | 23.75 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 611 | 23.75 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 632 | 23.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 634 | 23.76 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 640 | 23.76 | temperature | 30 | 4320 | < th | dose dependent | sin | 5 | NA |
| 642 | 23.76 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 702 | 23.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 703 | 23.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 711 | 23.77 | temperature | 10 | 4320 | > th | dose dependent | sin | 7 | NA |
| 724 | 23.77 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 735 | 23.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 766 | 23.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 786 | 23.77 | temperature | 15 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 793 | 23.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 794 | 23.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 802 | 23.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 863 | 23.78 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 876 | 23.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 877 | 23.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 878 | 23.79 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 880 | 23.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |