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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0168500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0155) R2 : 0.00242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0343 (0.0326) R2dN8 : 0.00312 R2N8 : 0.00242
σ : 0.292
deviance : 39.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.74 0.281 2.89 -0.23 0.02 6.17 -0.198 -22.7 0.0306 3.36 1.767 275 -- --
76.83 0.408 2.91 0.319 0.124 4.55 0.873 -- 0.0626 3.85 1.878 121 -- --
35.79 0.279 2.89 -0.225 0.0424 6.16 -- -22.6 0.0317 7.17 1.746 226 -- --
36.53 0.281 2.86 -0.0885 0.0266 1.02 -- -- 0.0318 4.05 1.5 275 -- --
35.89 0.279 2.89 -0.226 -- 6.2 -- -22.8 0.0323 -- 1.743 223 -- --
38.82 0.292 2.86 -0.0648 0.00954 -- -0.25 -- 0.0259 3.7 -- -- -- --
38.99 0.292 2.86 -0.0609 0.0188 -- -- -- 0.0273 7.64 -- -- -- --
36.56 0.282 2.86 -0.0844 -- 1.02 -- -- 0.0332 -- 1.5 273 -- --
36.64 0.282 2.85 -- 0.0404 1.04 -- -- 0.0388 7 1.5 179 -- --
39.01 0.292 2.86 -0.0606 -- -- -- -- 0.0276 -- -- -- -- --
39.09 0.292 2.85 -- 0.0184 -- -- -- 0.0341 7.86 -- -- -- --
36.75 0.282 2.85 -- -- 0.997 -- -- 0.0424 -- 1.5 257 -- --
39.1 0.292 2.85 -- -- -- -- -- 0.0343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.07 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 35.11 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 35.14 wind 3.0 30 < th dose independent rect. 2 1
6 35.15 temperature 25.0 30 < th dose independent rect. 2 1
11 35.19 temperature 10.0 30 > th dose independent rect. 2 1
14 35.19 humidity 50.0 30 > th dose independent rect. 2 1
18 35.19 atmosphere 1010.0 30 < th dose independent rect. 2 1
20 35.19 radiation 1.0 30 < th dose independent rect. 2 1
25 35.19 precipitation 0.1 30 < th dose independent rect. 2 1
26 35.19 temperature 10.0 30 > th dose independent rect. 3 23
27 35.19 wind 7.0 30 < th dose dependent rect. 2 1
29 35.19 temperature 10.0 30 > th dose dependent rect. 2 1
32 35.19 radiation 1.0 30 < th dose dependent rect. 2 1
37 35.19 precipitation 0.1 30 < th dose dependent rect. 2 1
41 35.24 humidity 50.0 30 > th dose dependent rect. 2 1
44 35.28 temperature 30.0 30 < th dose dependent rect. 2 1
47 35.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
53 35.42 wind 1.0 30 > th dose independent rect. 2 1
54 35.43 precipitation 0.1 270 > th dose dependent rect. 17 1
57 35.50 precipitation 0.1 270 > th dose independent rect. 17 1
62 35.57 temperature 30.0 90 > th dose dependent rect. 8 1
66 35.57 precipitation 0.1 270 > th dose dependent rect. 14 4
118 35.76 atmosphere 1000.0 270 < th dose independent rect. 16 1
122 35.79 atmosphere 1000.0 270 < th dose dependent rect. 16 1
133 35.84 temperature 20.0 10 < th dose independent rect. 14 6
139 35.85 temperature 20.0 10 < th dose independent rect. 19 1
166 35.91 temperature 30.0 90 > th dose independent rect. 8 1
182 35.93 radiation 1.0 14400 < th dose dependent rect. 3 1
206 36.06 wind 9.0 1440 < th dose independent rect. 3 1
207 36.06 temperature 10.0 1440 > th dose independent rect. 3 1
210 36.06 temperature 30.0 1440 < th dose independent rect. 3 1
214 36.06 humidity 50.0 1440 > th dose independent rect. 3 1
223 36.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
224 36.06 radiation 1.0 1440 < th dose independent rect. 3 1
244 36.06 temperature 10.0 1440 > th dose independent rect. 4 23
247 36.06 radiation 1.0 1440 < th dose dependent rect. 3 1
268 36.26 wind 9.0 30 < th dose independent rect. 3 23
274 36.31 atmosphere 995.0 30 > th dose independent rect. 3 23
296 36.55 precipitation 0.1 30 < th dose independent rect. 3 23
297 36.55 precipitation 0.1 30 < th dose dependent rect. 3 23
307 36.61 atmosphere 1005.0 10 < th dose independent rect. 20 1
310 36.65 atmosphere 1015.0 30 < th dose independent rect. 3 23
334 36.76 precipitation 0.1 270 > th dose dependent rect. 23 19
336 36.77 precipitation 0.1 270 > th dose dependent sin 20 NA
348 36.85 radiation 20.0 720 > th dose independent rect. 15 2
442 36.97 radiation 20.0 720 > th dose dependent rect. 15 1
461 37.02 radiation 1.0 720 > th dose dependent rect. 15 2
530 37.08 temperature 25.0 90 < th dose dependent rect. 18 1
560 37.11 temperature 25.0 90 < th dose dependent rect. 17 3
566 37.13 temperature 20.0 10 > th dose independent sin 21 NA
579 37.15 temperature 25.0 10 < th dose dependent rect. 18 2
582 37.16 radiation 20.0 720 < th dose independent rect. 15 8
608 37.18 wind 1.0 30 < th dose independent rect. 10 1
609 37.18 temperature 10.0 1440 > th dose independent rect. 11 1
613 37.18 atmosphere 995.0 1440 > th dose independent rect. 11 1
616 37.18 precipitation 0.1 1440 < th dose independent rect. 11 1
617 37.18 temperature 10.0 1440 > th dose independent rect. 12 23
620 37.18 wind 1.0 30 < th dose dependent rect. 10 1
621 37.18 radiation 1.0 270 < th dose dependent rect. 17 1
622 37.18 precipitation 0.1 1440 < th dose dependent rect. 11 1
631 37.21 temperature 20.0 10 < th dose independent sin 21 NA
633 37.21 humidity 50.0 30 > th dose independent rect. 3 23
638 37.22 radiation 30.0 720 < th dose dependent rect. 15 8
667 37.25 temperature 30.0 30 < th dose independent rect. 10 1
669 37.25 atmosphere 1005.0 30 > th dose dependent rect. 10 1
693 37.27 humidity 80.0 270 > th dose dependent rect. 17 1
701 37.29 humidity 70.0 30 < th dose independent rect. 10 1
705 37.30 atmosphere 1005.0 30 > th dose independent rect. 10 1
712 37.31 radiation 20.0 30 > th dose independent rect. 10 1
732 37.31 temperature 15.0 30 > th dose dependent rect. 10 1
735 37.31 humidity 80.0 30 < th dose dependent rect. 10 1
738 37.32 atmosphere 1010.0 30 < th dose independent rect. 10 1
741 37.32 wind 1.0 270 < th dose dependent rect. 7 1
755 37.33 temperature 10.0 30 > th dose independent rect. 10 1
757 37.33 humidity 50.0 30 > th dose independent rect. 10 1
761 37.33 atmosphere 995.0 30 > th dose independent rect. 10 1
764 37.33 radiation 1.0 30 > th dose independent rect. 10 1
766 37.33 radiation 1.0 270 < th dose independent rect. 17 1
767 37.33 precipitation 0.1 30 < th dose independent rect. 10 1
769 37.33 temperature 10.0 30 > th dose independent rect. 11 23
771 37.33 wind 5.0 30 < th dose dependent rect. 10 1
774 37.33 precipitation 0.1 30 < th dose dependent rect. 10 1
776 37.34 wind 1.0 30 > th dose independent rect. 10 1
778 37.34 radiation 40.0 30 < th dose independent rect. 10 1
800 37.35 radiation 40.0 90 > th dose independent rect. 8 1
822 37.35 temperature 30.0 30 < th dose independent rect. 3 23
824 37.35 radiation 1.0 30 > th dose dependent rect. 10 1
825 37.35 atmosphere 995.0 90 > th dose dependent rect. 19 8
829 37.36 humidity 90.0 270 > th dose independent rect. 17 1
939 37.40 radiation 40.0 30 < th dose dependent rect. 10 1
955 37.42 radiation 20.0 720 < th dose independent rect. 15 16
957 37.42 humidity 50.0 30 > th dose dependent rect. 10 1
960 37.43 humidity 80.0 90 > th dose independent rect. 16 4
980 37.45 wind 1.0 30 > th dose dependent rect. 10 1
982 37.45 atmosphere 1015.0 30 < th dose dependent rect. 10 1
993 37.47 radiation 1.0 270 < th dose dependent rect. 14 4
998 37.48 radiation 20.0 720 < th dose independent rect. 15 10