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Os12g0166500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nrap protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.027) R2 : 0.752
β1 : 0.79 (0.0988) R2dD : 0.0362 R2D : 0.0313
β2 : 2.26 (0.0708) R2dC : 0.574 R2C : 0.442
β3 : 1.57 (0.071) R2dE : 0.271 R2E : 0.15
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.0576) R2dN8 : 0.00654 R2N8 : -0.00739
σ : 0.505
deviance : 117.38
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_____
C
peak time of C : 19.1
E
wheather : temperature
threshold : 5.923
memory length : 79
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.36
open length of G : 6.82

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.77 0.503 9.17 0.795 2.26 1.65 0.935 -0.287 0.168 19.1 8.822 109 8.08 6.75
114.88 0.499 9.17 0.795 2.25 1.63 1.02 -- 0.169 19.1 7.453 109 8.1 6.73
116.97 0.504 9.17 0.787 2.27 1.63 -- -0.385 0.186 19 8.65 109 8.13 6.7
117.38 0.505 9.17 0.79 2.26 1.57 -- -- 0.172 19.1 5.923 79 8.36 6.82
150.55 0.571 9.13 0.632 -- 2.28 -- -1.45 0.081 -- 0.7236 881 7.75 4.37
157 0.587 9.16 0.86 2.39 -- 0.662 -- 0.161 17.1 -- -- -- --
158.11 0.589 9.16 0.861 2.39 -- -- -- 0.164 17.1 -- -- -- --
140.9 0.553 9.12 0.656 -- 2.33 -- -- 0.188 -- -17.53 857 7.4 5.08
133.68 0.538 9.19 -- 2.26 1.63 -- -- 0.0886 19.1 6.799 64 8.45 6.85
457.44 0.999 9.13 0.776 -- -- -- -- 0.103 -- -- -- -- --
177.65 0.623 9.18 -- 2.37 -- -- -- 0.0682 17.1 -- -- -- --
152.22 0.575 9.11 -- -- 2.39 -- -- 0.115 -- -3.64 896 7.45 4.93
473.32 1.02 9.15 -- -- -- -- -- 0.0174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.31 temperature 10.0 90 > th dose dependent rect. 8 7
2 116.93 wind 5.0 270 < th dose independent rect. 3 4
6 117.93 temperature 10.0 10 > th dose dependent rect. 9 6
7 118.11 wind 9.0 270 < th dose independent rect. 7 20
12 118.45 radiation 10.0 270 < th dose independent rect. 3 4
16 118.92 precipitation 0.1 270 < th dose independent rect. 3 4
17 118.92 precipitation 0.1 270 < th dose dependent rect. 3 4
18 118.98 radiation 30.0 270 < th dose dependent rect. 3 4
20 119.03 wind 5.0 270 < th dose independent rect. 4 1
32 119.54 humidity 70.0 270 > th dose independent rect. 3 4
33 119.55 radiation 20.0 270 < th dose independent rect. 2 6
35 119.57 temperature 10.0 270 > th dose independent rect. 3 4
37 119.57 temperature 30.0 270 < th dose independent rect. 3 4
38 119.57 humidity 50.0 270 > th dose independent rect. 3 4
40 119.57 atmosphere 995.0 270 > th dose independent rect. 3 4
41 119.57 atmosphere 1015.0 270 < th dose independent rect. 3 4
42 119.57 radiation 30.0 270 < th dose independent rect. 3 4
44 119.57 temperature 10.0 270 > th dose independent rect. 7 20
46 119.60 wind 9.0 270 < th dose independent rect. 5 23
80 120.22 wind 9.0 10 < th dose independent rect. 9 19
83 120.30 precipitation 0.1 270 < th dose independent rect. 7 20
84 120.30 precipitation 0.1 270 < th dose dependent rect. 7 20
85 120.31 wind 1.0 270 > th dose independent rect. 2 5
87 120.35 temperature 15.0 90 > th dose independent rect. 8 7
88 120.35 radiation 40.0 270 < th dose dependent rect. 2 6
97 120.55 wind 9.0 90 < th dose independent rect. 8 7
98 120.59 precipitation 0.1 90 < th dose independent rect. 8 7
99 120.59 precipitation 0.1 90 < th dose dependent rect. 8 7
107 120.82 atmosphere 1015.0 90 < th dose independent rect. 15 17
113 121.01 atmosphere 1015.0 90 < th dose independent rect. 8 7
114 121.01 temperature 10.0 90 > th dose independent rect. 15 17
116 121.08 wind 9.0 270 < th dose dependent rect. 3 4
117 121.09 radiation 1.0 270 < th dose dependent rect. 4 1
120 121.16 precipitation 0.1 270 < th dose independent rect. 4 1
121 121.16 wind 5.0 10 < th dose independent rect. 4 5
123 121.16 precipitation 0.1 270 < th dose dependent rect. 4 1
125 121.19 atmosphere 995.0 90 > th dose independent rect. 8 7
132 121.30 atmosphere 1000.0 90 > th dose dependent rect. 4 4
141 121.45 precipitation 0.1 10 < th dose independent rect. 4 5
143 121.45 precipitation 0.1 10 < th dose dependent rect. 4 5
147 121.49 atmosphere 995.0 90 > th dose independent rect. 15 17
149 121.51 radiation 40.0 90 < th dose independent rect. 15 17
153 121.54 radiation 1.0 90 > th dose independent rect. 8 7
155 121.57 temperature 10.0 270 > th dose independent rect. 4 1
157 121.57 temperature 30.0 270 < th dose independent rect. 4 1
158 121.57 humidity 50.0 270 > th dose independent rect. 4 1
161 121.57 atmosphere 995.0 270 > th dose independent rect. 4 1
162 121.57 atmosphere 1010.0 270 < th dose independent rect. 4 1
164 121.57 radiation 20.0 270 < th dose independent rect. 4 1
167 121.57 temperature 10.0 270 > th dose independent rect. 5 23
170 121.59 temperature 10.0 10 > th dose independent rect. 4 5
172 121.59 temperature 30.0 10 < th dose independent rect. 4 5
173 121.59 humidity 50.0 10 > th dose independent rect. 4 5
175 121.59 atmosphere 995.0 10 > th dose independent rect. 4 5
176 121.59 atmosphere 1015.0 10 < th dose independent rect. 4 5
177 121.59 temperature 10.0 10 > th dose independent rect. 9 19
178 121.61 radiation 40.0 270 < th dose dependent rect. 4 1
182 121.65 wind 9.0 270 < th dose dependent rect. 7 7
198 121.82 radiation 1.0 270 < th dose independent rect. 4 1
207 122.00 precipitation 0.1 90 < th dose independent rect. 15 17
208 122.00 precipitation 0.1 90 < th dose dependent rect. 15 17
235 122.12 wind 9.0 90 < th dose independent rect. 15 17
243 122.22 atmosphere 1000.0 270 > th dose dependent rect. 4 1
244 122.24 temperature 10.0 270 > th dose dependent rect. 3 3
257 122.44 precipitation 0.1 10 < th dose independent rect. 9 19
258 122.44 precipitation 0.1 10 < th dose dependent rect. 9 19
261 122.47 radiation 40.0 10 < th dose independent rect. 4 5
264 122.51 humidity 90.0 90 < th dose independent rect. 8 7
289 122.78 wind 1.0 90 > th dose independent rect. 8 7
291 122.79 atmosphere 1015.0 10 < th dose independent rect. 15 18
297 122.86 atmosphere 1000.0 10 > th dose dependent rect. 4 5
303 122.92 wind 9.0 270 < th dose dependent rect. 7 19
312 123.03 wind 9.0 270 < th dose dependent rect. 4 1
329 123.12 temperature 10.0 10 > th dose dependent rect. 4 5
348 123.25 wind 9.0 10 < th dose independent rect. 9 6
357 123.35 radiation 1.0 10 > th dose independent rect. 9 6
368 123.42 temperature 15.0 10 > th dose independent rect. 15 18
371 123.46 humidity 90.0 10 < th dose independent rect. 9 6
375 123.47 radiation 40.0 270 < th dose independent rect. 13 18
376 123.47 humidity 50.0 270 > th dose independent rect. 7 20
385 123.52 wind 9.0 10 < th dose dependent rect. 4 5
387 123.56 radiation 30.0 90 < th dose independent rect. 13 20
403 123.61 humidity 50.0 270 > th dose dependent rect. 3 3
414 123.69 atmosphere 995.0 10 > th dose independent rect. 9 19
418 123.71 temperature 10.0 10 > th dose independent rect. 9 6
420 123.71 atmosphere 995.0 10 > th dose independent rect. 9 6
421 123.71 atmosphere 1015.0 10 < th dose independent rect. 9 6
422 123.71 precipitation 0.1 10 < th dose independent rect. 9 6
424 123.71 precipitation 0.1 10 < th dose dependent rect. 9 6
459 124.03 temperature 10.0 1440 > th dose independent rect. 10 6
462 124.03 temperature 10.0 1440 > th dose independent rect. 16 18
465 124.03 atmosphere 995.0 90 > th dose independent rect. 8 20
473 124.07 humidity 50.0 270 > th dose dependent rect. 4 1
482 124.13 atmosphere 995.0 10 > th dose independent rect. 15 18
486 124.19 precipitation 0.1 10 < th dose independent rect. 15 18
488 124.19 precipitation 0.1 10 < th dose dependent rect. 15 18
545 124.46 radiation 10.0 270 < th dose dependent rect. 18 9
550 124.51 radiation 10.0 270 < th dose independent rect. 18 9
551 124.52 wind 9.0 270 < th dose independent rect. 18 9
558 124.56 humidity 70.0 90 > th dose independent rect. 3 8
575 124.63 temperature 10.0 270 > th dose independent rect. 18 9
576 124.63 humidity 50.0 270 > th dose independent rect. 18 9
580 124.63 temperature 10.0 270 > th dose independent rect. 3 15
581 124.63 atmosphere 1015.0 270 < th dose independent rect. 3 15
624 124.82 humidity 50.0 270 > th dose independent rect. 7 7
633 124.90 temperature 10.0 1440 > th dose independent rect. 5 5
636 124.90 atmosphere 995.0 1440 > th dose independent rect. 5 5
637 124.90 atmosphere 1015.0 1440 < th dose independent rect. 5 5
638 124.90 temperature 10.0 1440 > th dose independent rect. 10 19
643 124.92 atmosphere 1000.0 270 > th dose independent rect. 19 8
644 124.93 temperature 10.0 270 > th dose dependent rect. 4 1
654 124.94 atmosphere 1000.0 270 > th dose independent rect. 20 6
664 125.01 precipitation 0.1 270 < th dose independent rect. 3 15
665 125.01 precipitation 0.1 270 < th dose dependent rect. 3 15
671 125.06 temperature 10.0 270 > th dose dependent rect. 9 1
675 125.08 temperature 30.0 270 < th dose independent rect. 19 8
758 125.33 radiation 1.0 90 > th dose independent rect. 18 14
769 125.37 precipitation 0.1 270 < th dose independent rect. 18 9
770 125.37 precipitation 0.1 270 < th dose dependent rect. 18 9
781 125.42 wind 1.0 270 > th dose independent rect. 13 18
858 125.85 temperature 10.0 10 > th dose dependent rect. 9 19
898 126.00 atmosphere 1005.0 90 > th dose independent rect. 4 4
910 126.06 radiation 1.0 90 > th dose independent rect. 4 4
922 126.06 temperature 30.0 270 < th dose dependent rect. 4 1
924 126.07 radiation 1.0 270 < th dose independent rect. 3 9
947 126.16 humidity 90.0 10 < th dose dependent rect. 9 6
953 126.19 wind 9.0 270 < th dose dependent rect. 8 3
975 126.32 atmosphere 995.0 270 > th dose independent rect. 3 15
980 126.33 radiation 40.0 90 < th dose independent rect. 4 16
982 126.33 radiation 40.0 270 < th dose dependent rect. 15 16