FiT-DB / Search/ Help/ Sample detail

Os12g0163600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.69 (0.0223) R2 : 0.814
β1 : 1.55 (0.0815) R2dD : 0.153 R2D : 0.117
β2 : 2.33 (0.0576) R2dC : 0.669 R2C : 0.642
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.443 (0.0475) R2dN8 : 0.0476 R2N8 : -0.00185
σ : 0.418
deviance : 79.81
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.86 0.393 8.69 1.53 2.1 -0.533 0.127 -0.636 0.425 19.3 29.3 264 -- --
70.01 0.39 8.69 1.5 2.09 -0.558 0.111 -- 0.405 19.4 29.1 268 -- --
69.65 0.389 8.69 1.54 2.09 -0.526 -- -0.731 0.425 19.4 29.1 264 -- --
70 0.39 8.7 1.45 2.08 -0.568 -- -- 0.39 19.4 29 268 -- --
211.09 0.677 8.72 1.06 -- -1.83 -- -0.184 0.151 -- 28.2 496 -- --
79.32 0.418 8.69 1.56 2.32 -- 0.432 -- 0.442 19.1 -- -- -- --
79.81 0.418 8.69 1.55 2.33 -- -- -- 0.443 19.1 -- -- -- --
210.19 0.675 8.7 1.16 -- -1.89 -- -- 0.166 -- 28.23 496 -- --
122.87 0.516 8.75 -- 1.95 -0.765 -- -- 0.185 19.7 28.3 264 -- --
364.65 0.892 8.64 1.5 -- -- -- -- 0.401 -- -- -- -- --
143.01 0.559 8.73 -- 2.31 -- -- -- 0.271 19.1 -- -- -- --
244.72 0.729 8.73 -- -- -2.04 -- -- 0.0235 -- 28.25 507 -- --
424.22 0.961 8.68 -- -- -- -- -- 0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.34 temperature 30.0 270 < th dose dependent rect. 22 8
2 65.73 radiation 30.0 270 < th dose independent rect. 7 2
3 65.77 radiation 40.0 270 < th dose dependent rect. 7 2
5 65.87 temperature 10.0 270 > th dose dependent rect. 17 8
7 65.93 temperature 30.0 270 < th dose independent rect. 6 6
8 65.95 radiation 40.0 270 < th dose independent rect. 6 5
12 66.21 radiation 40.0 270 < th dose independent rect. 7 15
13 66.25 radiation 40.0 270 < th dose independent rect. 6 19
14 66.33 temperature 30.0 270 < th dose independent rect. 6 15
18 66.40 temperature 15.0 270 > th dose dependent rect. 10 7
27 66.65 temperature 15.0 10 > th dose independent rect. 20 16
28 66.67 wind 9.0 90 < th dose independent rect. 12 19
29 66.68 temperature 30.0 270 < th dose independent rect. 17 19
31 66.73 radiation 1.0 90 > th dose independent rect. 7 5
32 66.74 temperature 10.0 10 > th dose dependent rect. 12 8
33 66.75 wind 7.0 270 < th dose independent rect. 1 15
44 66.85 radiation 40.0 270 < th dose dependent rect. 6 19
49 66.93 temperature 10.0 90 > th dose dependent rect. 12 7
59 67.03 wind 1.0 10 > th dose independent rect. 7 5
66 67.09 precipitation 0.1 90 < th dose independent rect. 7 5
67 67.09 precipitation 0.1 90 < th dose dependent rect. 7 5
69 67.10 temperature 10.0 90 > th dose independent rect. 7 5
70 67.10 atmosphere 995.0 90 > th dose independent rect. 7 5
71 67.10 atmosphere 1015.0 90 < th dose independent rect. 7 5
73 67.10 temperature 10.0 90 > th dose independent rect. 12 19
74 67.10 wind 9.0 270 < th dose independent rect. 9 22
76 67.11 temperature 15.0 270 > th dose independent rect. 16 9
80 67.15 temperature 30.0 90 < th dose independent rect. 19 17
81 67.15 temperature 10.0 10 > th dose dependent rect. 20 16
94 67.26 precipitation 0.1 90 < th dose independent rect. 12 19
95 67.26 precipitation 0.1 90 < th dose dependent rect. 12 19
99 67.29 temperature 10.0 1440 > th dose independent rect. 8 5
102 67.29 atmosphere 995.0 1440 > th dose independent rect. 8 5
103 67.29 temperature 10.0 1440 > th dose independent rect. 13 19
106 67.30 wind 9.0 90 < th dose independent rect. 7 5
132 67.49 temperature 30.0 270 < th dose independent rect. 7 3
141 67.53 radiation 20.0 270 < th dose independent rect. 15 10
147 67.57 wind 7.0 270 < th dose independent rect. 11 6
152 67.59 radiation 40.0 270 < th dose dependent rect. 6 5
160 67.64 atmosphere 1015.0 90 < th dose dependent rect. 12 7
172 67.71 radiation 40.0 270 < th dose independent rect. 17 18
192 67.81 atmosphere 995.0 30 > th dose dependent rect. 7 5
201 67.85 humidity 90.0 90 < th dose independent rect. 19 17
205 67.86 atmosphere 1015.0 10 < th dose dependent rect. 12 8
206 67.87 wind 7.0 270 < th dose independent rect. 10 8
212 67.91 radiation 40.0 270 < th dose dependent rect. 7 16
213 67.92 humidity 90.0 30 < th dose independent rect. 7 5
219 67.93 atmosphere 1015.0 90 < th dose independent rect. 19 17
225 67.94 temperature 30.0 270 < th dose dependent rect. 6 6
231 67.96 temperature 30.0 270 < th dose dependent rect. 7 2
241 67.99 temperature 30.0 270 < th dose dependent rect. 6 13
246 68.03 wind 9.0 270 < th dose independent rect. 7 2
247 68.03 temperature 10.0 270 > th dose independent rect. 7 2
249 68.03 humidity 50.0 270 > th dose independent rect. 7 2
250 68.03 atmosphere 995.0 270 > th dose independent rect. 7 2
251 68.03 atmosphere 1015.0 270 < th dose independent rect. 7 2
252 68.03 precipitation 0.1 270 < th dose independent rect. 7 2
255 68.03 temperature 10.0 270 > th dose independent rect. 9 22
256 68.03 precipitation 0.1 270 < th dose dependent rect. 7 2
269 68.07 precipitation 0.1 90 < th dose independent rect. 12 7
270 68.07 temperature 30.0 10 < th dose independent rect. 20 16
271 68.07 precipitation 0.1 90 < th dose dependent rect. 12 7
280 68.12 wind 9.0 10 < th dose independent rect. 12 8
282 68.13 temperature 30.0 270 < th dose dependent rect. 6 9
283 68.14 atmosphere 1010.0 90 < th dose independent rect. 12 7
286 68.14 radiation 40.0 270 < th dose dependent rect. 15 10
294 68.19 temperature 10.0 90 > th dose independent rect. 12 7
300 68.19 atmosphere 995.0 90 > th dose independent rect. 19 17
305 68.20 humidity 50.0 270 > th dose dependent rect. 21 9
318 68.23 precipitation 0.1 90 < th dose independent rect. 19 17
322 68.23 precipitation 0.1 90 < th dose dependent rect. 19 17
323 68.24 wind 1.0 90 > th dose independent rect. 12 7
340 68.31 radiation 1.0 270 > th dose independent rect. 4 7
354 68.32 atmosphere 1015.0 10 < th dose independent rect. 20 16
358 68.33 temperature 10.0 1440 > th dose independent rect. 13 7
361 68.33 temperature 10.0 1440 > th dose independent rect. 20 17
364 68.33 atmosphere 995.0 1440 > th dose independent rect. 20 17
368 68.34 atmosphere 1010.0 10 < th dose independent rect. 12 8
375 68.36 wind 9.0 90 < th dose independent rect. 19 17
385 68.39 radiation 1.0 270 < th dose dependent sin 6 NA
402 68.44 radiation 1.0 270 > th dose independent rect. 7 2
409 68.44 humidity 50.0 270 > th dose dependent rect. 7 2
416 68.47 atmosphere 1010.0 270 < th dose independent rect. 10 8
425 68.49 atmosphere 1010.0 270 < th dose independent rect. 17 8
430 68.50 humidity 50.0 90 > th dose independent rect. 7 5
440 68.53 humidity 70.0 270 > th dose independent rect. 6 16
442 68.53 temperature 15.0 270 > th dose independent rect. 17 18
445 68.54 precipitation 0.1 10 < th dose independent rect. 12 8
450 68.54 precipitation 0.1 10 < th dose dependent rect. 12 8
475 68.58 humidity 70.0 270 > th dose independent rect. 6 19
479 68.59 atmosphere 1015.0 270 < th dose independent rect. 6 16
490 68.62 atmosphere 995.0 270 > th dose dependent rect. 7 2
493 68.62 temperature 10.0 270 > th dose dependent rect. 2 14
505 68.65 humidity 90.0 90 < th dose independent rect. 12 7
529 68.71 temperature 15.0 4320 > th dose independent rect. 10 3
531 68.71 precipitation 0.1 10 < th dose independent rect. 20 16
534 68.71 precipitation 0.1 10 < th dose dependent rect. 20 16
535 68.72 temperature 10.0 10 > th dose independent rect. 12 8
540 68.72 atmosphere 995.0 10 > th dose independent rect. 20 16
549 68.75 radiation 1.0 270 > th dose independent sin 7 NA
550 68.75 radiation 1.0 270 < th dose independent sin 7 NA
557 68.76 atmosphere 995.0 90 > th dose independent rect. 12 19
643 68.91 wind 9.0 10 < th dose independent rect. 20 16
717 69.05 wind 1.0 10 > th dose independent rect. 12 8
718 69.05 humidity 50.0 90 > th dose independent rect. 19 17
722 69.06 temperature 25.0 270 > th dose dependent rect. 4 12
739 69.08 temperature 15.0 270 > th dose independent rect. 1 15
747 69.09 precipitation 0.1 270 < th dose independent rect. 9 22
748 69.09 humidity 50.0 270 > th dose dependent rect. 6 5
753 69.09 precipitation 0.1 270 < th dose dependent rect. 9 22
766 69.12 temperature 15.0 270 > th dose independent rect. 6 16
811 69.20 temperature 10.0 270 > th dose independent rect. 22 8
812 69.20 temperature 30.0 270 < th dose independent rect. 22 8
813 69.20 humidity 50.0 270 > th dose independent rect. 22 8
816 69.20 atmosphere 995.0 270 > th dose independent rect. 22 8
817 69.20 radiation 20.0 270 < th dose independent rect. 22 8
824 69.21 wind 9.0 270 < th dose independent rect. 22 8
870 69.26 humidity 90.0 10 < th dose independent rect. 12 8
879 69.27 radiation 40.0 270 < th dose dependent rect. 22 8
885 69.28 temperature 15.0 10 > th dose dependent rect. 20 7
915 69.32 radiation 1.0 90 > th dose independent rect. 12 18
937 69.37 precipitation 0.1 1440 < th dose independent rect. 10 3
943 69.37 precipitation 0.1 1440 < th dose dependent rect. 10 3
953 69.38 wind 9.0 90 < th dose dependent rect. 12 7
964 69.39 precipitation 0.1 270 < th dose independent rect. 17 18
968 69.39 precipitation 0.1 270 < th dose dependent rect. 17 18
980 69.41 humidity 50.0 270 > th dose independent rect. 16 9