Os12g0162400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcineurin B-like protein 3 (SOS3-like calcium binding protein 6).
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Os12g0162400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcineurin B-like protein 3 (SOS3-like calcium binding protein 6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.65 | 0.243 | 11 | -0.562 | 0.246 | 0.976 | -0.0951 | -1.25 | -0.0918 | 21.8 | 20.68 | 46 | -- | -- |
| 27.83 | 0.246 | 11 | -0.343 | 0.247 | 0.914 | 0.109 | -- | -0.0313 | 21.8 | 19.98 | 44 | -- | -- |
| 26.68 | 0.241 | 11 | -0.549 | 0.245 | 0.972 | -- | -1.21 | -0.0885 | 21.8 | 20.8 | 46 | -- | -- |
| 27.87 | 0.246 | 11 | -0.348 | 0.246 | 0.906 | -- | -- | -0.0302 | 21.6 | 19.87 | 44 | -- | -- |
| 28.06 | 0.247 | 11 | -0.599 | -- | 0.922 | -- | -1.35 | -0.0976 | -- | 21 | 333 | -- | -- |
| 40.16 | 0.297 | 10.9 | -0.151 | 0.37 | -- | -0.0955 | -- | 0.124 | 17.5 | -- | -- | -- | -- |
| 40.18 | 0.297 | 10.9 | -0.15 | 0.369 | -- | -- | -- | 0.124 | 17.5 | -- | -- | -- | -- |
| 29.33 | 0.252 | 11 | -0.345 | -- | 0.836 | -- | -- | -0.0277 | -- | 20.36 | 342 | -- | -- |
| 30.78 | 0.258 | 11 | -- | 0.241 | 0.776 | -- | -- | 0.0281 | 20.8 | 20.2 | 44 | -- | -- |
| 47.28 | 0.321 | 10.9 | -0.163 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 40.78 | 0.299 | 10.9 | -- | 0.372 | -- | -- | -- | 0.141 | 17.5 | -- | -- | -- | -- |
| 32.26 | 0.265 | 11 | -- | -- | 0.757 | -- | -- | 0.0266 | -- | 20.8 | 333 | -- | -- |
| 47.98 | 0.323 | 10.9 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 2 | 24.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 4 | 24.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 19 | 26.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 44 | 26.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 47 | 27.00 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 50 | 27.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 57 | 27.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 61 | 27.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 64 | 27.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 65 | 27.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 73 | 27.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 76 | 27.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 80 | 27.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 85 | 27.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 88 | 27.41 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 14 |
| 91 | 27.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 110 | 27.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 125 | 27.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 155 | 27.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 172 | 27.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 183 | 27.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 207 | 28.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 234 | 28.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 254 | 28.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 260 | 28.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 262 | 28.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 292 | 28.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 306 | 28.26 | temperature | 25 | 10 | > th | dose dependent | sin | 10 | NA |
| 325 | 28.29 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 356 | 28.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 381 | 28.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 382 | 28.38 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 406 | 28.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 426 | 28.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 475 | 28.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 483 | 28.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 698 | 28.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 737 | 28.83 | temperature | 25 | 30 | > th | dose independent | rect. | 15 | 20 |
| 777 | 28.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 794 | 28.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 808 | 28.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 819 | 28.90 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 843 | 28.92 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 900 | 28.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 944 | 29.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 6 |