Os12g0161100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os12g0161100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.08 | 0.458 | 10.6 | 0.45 | 0.315 | -0.526 | 0.106 | -0.223 | -0.166 | 17.3 | 10.44 | 9 | -- | -- |
| 94.92 | 0.457 | 10.6 | 0.463 | 0.299 | -0.503 | 0.0838 | -- | -0.161 | 17.7 | 10.44 | 9 | -- | -- |
| 94.87 | 0.457 | 10.6 | 0.465 | 0.3 | -0.508 | -- | -0.103 | -0.161 | 17.6 | 10.44 | 8 | -- | -- |
| 94.93 | 0.457 | 10.6 | 0.463 | 0.299 | -0.507 | -- | -- | -0.161 | 17.6 | 10.44 | 8 | -- | -- |
| 99.49 | 0.467 | 10.6 | 0.452 | -- | -0.483 | -- | -0.0894 | -0.168 | -- | 10.44 | 8 | -- | -- |
| 104.7 | 0.48 | 10.6 | 0.404 | 0.551 | -- | 0.332 | -- | -0.159 | 22 | -- | -- | -- | -- |
| 105.13 | 0.48 | 10.6 | 0.391 | 0.55 | -- | -- | -- | -0.16 | 22 | -- | -- | -- | -- |
| 99.54 | 0.467 | 10.6 | 0.451 | -- | -0.484 | -- | -- | -0.167 | -- | 10.44 | 8 | -- | -- |
| 99.6 | 0.465 | 10.6 | -- | 0.266 | -0.518 | -- | -- | -0.201 | 16.7 | 8.28 | 5 | -- | -- |
| 123.28 | 0.519 | 10.6 | 0.398 | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
| 109.17 | 0.489 | 10.6 | -- | 0.551 | -- | -- | -- | -0.203 | 22 | -- | -- | -- | -- |
| 103.36 | 0.474 | 10.6 | -- | -- | -0.476 | -- | -- | -0.208 | -- | 8.136 | 5 | -- | -- |
| 127.46 | 0.527 | 10.6 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.20 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 2 | 81.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 12 | 82.92 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 18 | 83.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 31 | 83.85 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 34 | 83.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 54 | 84.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 89 | 85.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 113 | 85.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 139 | 86.11 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 148 | 86.26 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 157 | 86.35 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 9 |
| 172 | 86.55 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 224 | 87.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 230 | 87.30 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 246 | 87.42 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 251 | 87.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 284 | 87.71 | temperature | 15.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 358 | 88.22 | temperature | 30.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 400 | 88.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 484 | 88.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 18 |
| 488 | 88.94 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 554 | 89.22 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 598 | 89.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 622 | 89.55 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 639 | 89.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 644 | 89.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 694 | 89.81 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 770 | 90.10 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 854 | 90.46 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 856 | 90.46 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 904 | 90.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 915 | 90.68 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 920 | 90.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 932 | 90.74 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 939 | 90.77 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 957 | 90.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 960 | 90.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |