Os12g0160200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0160200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.96	(0.234)	R²	:	0.234
β₁	:	4.6	(0.531)	R²_dD	:	1.7	R²_D	:	-5.32
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-62.1	(8.31)	R²_dE	:	102	R²_E	:	-102
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-128	(17.7)	R²_dD*E	:	93	R²_D*E	:	-93.7
γ₁	:	-0.285	(0.0877)	R²_dN8	:	0.0247	R²_N8	:	-3.74
σ	:	0.753
deviance	:	261.27
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	15
memory length	:	4320
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	10.1
open length of G	:	3.03

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
259.7	0.757	4.96	4.59	0.2	-62.2	0.426	-128	-0.313	7.12	15	4320	10	3.02
299.82	0.813	3.34	0.473	0.153	-0.582	-0.414	--	-0.526	8.21	15.03	4321	11.5	1.27
260.18	0.751	4.96	4.6	0.2	-62.1	--	-128	-0.313	7.12	15	4320	10	3.02
293.29	0.798	3.32	0.835	0.0064	-1.39	--	--	-0.519	7.82	15.1	4309	12.8	1.57
261.27	0.753	4.96	4.6	--	-62.1	--	-128	-0.285	--	15	4320	10.1	3.03
309.41	0.825	3.32	0.488	0.331	--	0.627	--	-0.413	1.92	--	--	--	--
310.88	0.826	3.32	0.468	0.335	--	--	--	-0.417	2.28	--	--	--	--
290.13	0.793	3.31	0.846	--	-1.73	--	--	-0.414	--	16.8	4316	13.9	0.124
307.06	0.816	3.31	--	0.281	-0.925	--	--	-0.307	5.04	15.12	4264	13.5	1.73
317.56	0.833	3.32	0.482	--	--	--	--	-0.409	--	--	--	--	--
316.65	0.832	3.33	--	0.344	--	--	--	-0.469	2.3	--	--	--	--
308.54	0.818	3.32	--	--	-1.11	--	--	-0.404	--	16.81	4294	13.9	0.117
323.69	0.84	3.33	--	--	--	--	--	-0.462	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	260.15	temperature	15.0	4320	> th	dose independent	rect.	10	3
3	262.44	precipitation	0.1	1440	> th	dose independent	rect.	10	1
5	262.44	precipitation	0.1	1440	> th	dose dependent	rect.	10	1
11	265.27	temperature	15.0	4320	> th	dose independent	rect.	7	7
14	265.86	temperature	20.0	1440	< th	dose dependent	rect.	13	1
16	266.27	temperature	20.0	1440	< th	dose independent	rect.	13	1
18	266.42	temperature	15.0	4320	< th	dose dependent	rect.	10	3
19	266.60	temperature	15.0	4320	< th	dose independent	rect.	10	1
23	266.60	temperature	15.0	4320	< th	dose dependent	rect.	10	1
35	267.72	temperature	15.0	4320	< th	dose dependent	rect.	10	6
46	269.05	temperature	15.0	4320	< th	dose independent	rect.	10	7
210	275.29	temperature	15.0	4320	< th	dose independent	sin	23	NA
225	275.51	temperature	15.0	4320	> th	dose independent	sin	23	NA
274	276.79	temperature	15.0	4320	< th	dose dependent	sin	23	NA
334	277.86	humidity	50.0	14400	< th	dose dependent	rect.	11	1
335	277.88	precipitation	0.1	4320	> th	dose independent	rect.	12	1
337	277.88	precipitation	0.1	4320	> th	dose dependent	rect.	12	1
401	278.97	humidity	90.0	1440	< th	dose independent	rect.	16	2
407	279.02	radiation	1.0	4320	< th	dose independent	rect.	12	2
413	279.02	radiation	1.0	4320	< th	dose dependent	rect.	12	2
437	279.26	radiation	1.0	4320	> th	dose independent	rect.	13	1
474	279.88	humidity	50.0	14400	< th	dose independent	rect.	8	1
492	279.88	humidity	50.0	14400	< th	dose dependent	rect.	8	1
557	280.45	temperature	20.0	1440	> th	dose independent	rect.	15	2
610	281.06	humidity	50.0	14400	> th	dose independent	rect.	18	9
630	281.29	humidity	80.0	1440	> th	dose independent	rect.	10	2
642	281.33	humidity	90.0	4320	< th	dose independent	rect.	10	1
670	281.59	humidity	90.0	1440	> th	dose independent	rect.	17	1
679	281.65	wind	9.0	4320	> th	dose dependent	rect.	5	6
704	281.88	humidity	70.0	1440	> th	dose dependent	rect.	10	2
747	282.21	wind	9.0	4320	> th	dose dependent	rect.	10	1
861	283.13	humidity	90.0	4320	< th	dose independent	rect.	12	1
927	283.54	humidity	90.0	720	> th	dose independent	rect.	16	8
933	283.60	wind	9.0	4320	< th	dose independent	rect.	11	1
943	283.65	temperature	15.0	4320	> th	dose independent	rect.	17	6
974	283.83	humidity	50.0	14400	< th	dose independent	rect.	11	1
995	283.92	wind	9.0	4320	> th	dose independent	rect.	11	1