FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0159100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0471) R2 : 0.0868
β1 : 0.837 (0.192) R2dD : 0.0538 R2D : -0.0404
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.8 (0.349) R2dE : 0.189 R2E : -0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.5 (2.29) R2dD*E : 0.331 R2D*E : -0.129
γ1 : -0.0937 (0.0954) R2dN8 : 0.00331 R2N8 : -0.0122
σ : 0.83
deviance : 317.38
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1
memory length : 255
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.03
open length of G : 0.933

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.02 0.834 2.85 0.786 0.0688 -1.61 0.879 14.4 -0.108 19.9 0.9387 273 4.04 0.982
343.37 0.87 2.94 0.145 0.132 0.325 0.179 -- -0.0997 0.991 0.9387 273 4.04 0.982
316.54 0.829 2.83 0.824 0.13 -1.84 -- 16.1 -0.105 22.3 0.9 267 4.04 0.919
340.24 0.859 2.94 0.0873 0.163 0.531 -- -- -0.141 0.58 0.03332 221 4.37 0.9
317.38 0.83 2.83 0.837 -- -1.8 -- 15.5 -0.0937 -- 1 255 4.03 0.933
344.18 0.87 2.95 0.155 0.148 -- 0.224 -- -0.108 1.63 -- -- -- --
344.38 0.869 2.95 0.148 0.148 -- -- -- -0.109 1.38 -- -- -- --
339.6 0.858 2.94 0.0873 -- 1.03 -- -- -0.0769 -- 0.1936 272 4.34 0.814
338.65 0.857 2.95 -- 0.143 1.09 -- -- -0.0842 23.9 0.1648 284 4.46 0.817
345.73 0.869 2.94 0.153 -- -- -- -- -0.106 -- -- -- -- --
344.95 0.869 2.95 -- 0.151 -- -- -- -0.125 1.41 -- -- -- --
332.06 0.849 2.94 -- -- 2.23 -- -- -0.172 -- 0.0663 253 4.68 0.367
346.35 0.869 2.95 -- -- -- -- -- -0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.38 wind 1.0 270 < th dose independent rect. 4 1
2 315.85 wind 1.0 270 < th dose dependent rect. 4 1
3 318.80 wind 1.0 10 < th dose independent rect. 8 1
5 318.80 wind 1.0 10 < th dose dependent rect. 8 1
7 321.12 temperature 20.0 270 < th dose independent rect. 12 7
10 321.17 temperature 20.0 270 < th dose dependent rect. 13 6
14 321.23 temperature 20.0 270 < th dose independent rect. 17 2
16 321.23 temperature 20.0 270 < th dose dependent rect. 17 2
23 321.57 temperature 20.0 10 < th dose independent rect. 5 18
45 322.97 wind 5.0 10 > th dose dependent rect. 20 2
47 323.72 temperature 20.0 270 < th dose independent rect. 4 1
49 323.78 humidity 60.0 10 < th dose independent rect. 12 3
51 323.87 humidity 60.0 10 < th dose independent rect. 14 1
72 326.32 wind 5.0 10 > th dose independent rect. 20 2
74 326.55 temperature 20.0 30 > th dose independent sin 22 NA
75 326.59 temperature 20.0 30 < th dose independent sin 22 NA
83 327.16 wind 1.0 90 < th dose independent rect. 6 1
89 327.67 wind 1.0 90 < th dose independent rect. 6 3
90 327.67 radiation 1.0 270 < th dose dependent rect. 5 1
95 328.05 temperature 25.0 30 < th dose dependent rect. 4 18
108 328.41 humidity 80.0 10 < th dose dependent rect. 20 3
117 328.61 temperature 30.0 90 < th dose dependent rect. 18 15
120 328.84 temperature 20.0 30 < th dose independent rect. 13 9
125 328.93 wind 3.0 10 < th dose independent rect. 13 2
126 328.93 temperature 20.0 30 < th dose independent rect. 15 7
140 329.03 temperature 20.0 30 < th dose independent rect. 17 5
147 329.07 humidity 80.0 10 < th dose dependent rect. 22 1
150 329.07 humidity 80.0 90 > th dose dependent rect. 5 5
152 329.09 humidity 90.0 270 > th dose dependent rect. 4 2
162 329.20 temperature 25.0 270 < th dose dependent rect. 4 2
166 329.22 temperature 20.0 30 < th dose independent rect. 9 13
172 329.27 humidity 90.0 90 > th dose independent rect. 5 4
173 329.27 temperature 25.0 90 < th dose independent rect. 18 15
177 329.30 atmosphere 1005.0 90 < th dose dependent rect. 13 1
180 329.33 atmosphere 1005.0 10 < th dose dependent rect. 14 1
199 329.47 wind 3.0 10 < th dose dependent rect. 13 1
200 329.48 radiation 1.0 270 < th dose independent rect. 5 1
202 329.48 temperature 10.0 90 > th dose dependent rect. 21 8
219 329.65 humidity 80.0 10 < th dose independent rect. 20 2
229 329.71 wind 1.0 90 < th dose independent rect. 4 5
243 329.83 precipitation 0.1 90 < th dose independent rect. 5 16
246 329.83 precipitation 0.1 90 < th dose dependent rect. 5 16
248 329.84 humidity 60.0 10 > th dose independent rect. 5 16
271 330.01 radiation 1.0 10 < th dose independent sin 9 NA
278 330.07 temperature 25.0 30 < th dose dependent rect. 4 4
298 330.19 wind 5.0 270 > th dose dependent rect. 18 2
333 330.44 radiation 1.0 10 < th dose dependent sin 9 NA
349 330.60 wind 1.0 720 > th dose independent rect. 15 8
377 330.84 temperature 10.0 1440 > th dose independent rect. 22 8
380 330.84 temperature 30.0 1440 < th dose independent rect. 22 8
384 330.84 humidity 50.0 1440 > th dose independent rect. 22 8
391 330.84 atmosphere 995.0 1440 > th dose independent rect. 22 8
392 330.84 radiation 20.0 1440 < th dose independent rect. 22 8
401 330.84 temperature 10.0 1440 > th dose independent rect. 6 16
413 330.93 radiation 40.0 90 > th dose dependent rect. 13 1
414 330.93 temperature 25.0 10 < th dose dependent rect. 19 3
423 331.01 wind 5.0 4320 < th dose independent rect. 24 1
427 331.04 wind 7.0 90 < th dose independent rect. 21 8
430 331.06 radiation 40.0 10 > th dose dependent rect. 13 1
431 331.07 wind 5.0 4320 > th dose independent rect. 24 1
433 331.07 atmosphere 995.0 90 > th dose independent rect. 5 16
434 331.08 radiation 1.0 10 > th dose independent sin 10 NA
445 331.14 temperature 10.0 90 > th dose independent rect. 21 8
446 331.14 temperature 30.0 90 < th dose independent rect. 21 8
447 331.14 humidity 50.0 90 > th dose independent rect. 21 8
450 331.14 atmosphere 995.0 90 > th dose independent rect. 21 8
451 331.14 radiation 20.0 90 < th dose independent rect. 21 8
454 331.14 temperature 10.0 90 > th dose independent rect. 5 16
455 331.14 atmosphere 1015.0 90 < th dose independent rect. 5 16
457 331.15 radiation 40.0 90 < th dose dependent rect. 21 8
465 331.20 wind 9.0 90 < th dose independent rect. 5 16
467 331.21 radiation 1.0 90 < th dose independent rect. 21 8
469 331.21 atmosphere 1005.0 270 > th dose dependent rect. 18 1
472 331.22 precipitation 0.1 4320 > th dose independent rect. 20 5
479 331.24 wind 3.0 4320 > th dose dependent rect. 24 1
486 331.27 radiation 1.0 10 < th dose independent rect. 21 11
503 331.35 humidity 70.0 10 < th dose dependent rect. 12 2
507 331.37 precipitation 0.1 4320 > th dose independent rect. 20 3
513 331.39 precipitation 0.1 4320 < th dose independent rect. 20 5
515 331.39 precipitation 0.1 4320 < th dose dependent rect. 20 5
520 331.42 precipitation 0.1 4320 < th dose independent rect. 20 3
521 331.42 precipitation 0.1 4320 < th dose dependent rect. 20 3
567 331.46 radiation 1.0 10 < th dose dependent rect. 21 11
572 331.47 radiation 1.0 10 < th dose independent rect. 21 9
573 331.48 precipitation 0.1 90 < th dose independent rect. 21 8
575 331.48 precipitation 0.1 90 < th dose dependent rect. 21 8
579 331.50 radiation 1.0 10 < th dose dependent rect. 21 9
580 331.51 precipitation 0.1 4320 < th dose independent rect. 23 1
581 331.51 precipitation 0.1 4320 < th dose dependent rect. 23 1
583 331.52 temperature 20.0 10 < th dose independent rect. 5 1
627 331.65 precipitation 0.1 4320 > th dose dependent rect. 20 5
659 331.68 wind 1.0 90 < th dose independent rect. 4 13
671 331.71 humidity 50.0 30 > th dose dependent rect. 21 8
685 331.79 radiation 40.0 10 > th dose independent rect. 13 1
722 331.85 temperature 25.0 10 < th dose dependent rect. 20 1
724 331.85 precipitation 0.1 4320 > th dose dependent rect. 21 2
735 331.88 wind 9.0 10 < th dose dependent rect. 21 8
744 331.91 atmosphere 1005.0 90 < th dose independent rect. 12 1
784 332.04 temperature 25.0 10 < th dose independent rect. 18 15
857 332.20 temperature 30.0 30 < th dose independent rect. 5 16
859 332.20 wind 1.0 270 < th dose dependent rect. 4 17
897 332.24 wind 5.0 4320 < th dose independent rect. 19 8
906 332.26 wind 1.0 90 < th dose dependent rect. 4 12
930 332.29 wind 5.0 270 > th dose dependent rect. 2 1
933 332.30 humidity 60.0 10 > th dose independent rect. 5 21
960 332.39 wind 5.0 270 > th dose independent rect. 2 1
965 332.40 wind 1.0 90 < th dose dependent rect. 4 10
967 332.41 wind 5.0 4320 > th dose independent rect. 19 8
998 332.50 atmosphere 995.0 270 > th dose dependent rect. 5 1
1000 332.50 atmosphere 1005.0 30 > th dose dependent rect. 19 4