Os12g0156100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC-domain containing protein 90 (ANAC090).
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Os12g0156100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC-domain containing protein 90 (ANAC090).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 403.64 | 0.944 | 3.71 | 1.4 | 1.3 | -3.22 | -0.0736 | -7.58 | 0.701 | 6.3 | 0.4389 | 4280 | -- | -- |
| 443.06 | 0.98 | 3.94 | -0.0116 | 1.19 | -2.89 | 0.416 | -- | 0.232 | 5.66 | 2.006 | 8607 | -- | -- |
| 403.6 | 0.936 | 3.71 | 1.4 | 1.3 | -3.25 | -- | -7.67 | 0.701 | 6.32 | 0.4247 | 4279 | -- | -- |
| 428.71 | 0.964 | 3.93 | 0.21 | 1.31 | -2.05 | -- | -- | 0.322 | 6.05 | 2.119 | 8581 | -- | -- |
| 485.61 | 1.03 | 3.72 | 1.51 | -- | -3.33 | -- | -8.14 | 0.753 | -- | 0.3701 | 4316 | -- | -- |
| 483.21 | 1.03 | 3.82 | 0.76 | 1.3 | -- | 0.143 | -- | 0.807 | 5.62 | -- | -- | -- | -- |
| 483.25 | 1.03 | 3.82 | 0.761 | 1.3 | -- | -- | -- | 0.807 | 5.64 | -- | -- | -- | -- |
| 514.11 | 1.06 | 3.94 | 0.327 | -- | -2.01 | -- | -- | 0.395 | -- | 2.17 | 8633 | -- | -- |
| 430.09 | 0.966 | 3.92 | -- | 1.3 | -2.04 | -- | -- | 0.359 | 5.91 | 1.743 | 8588 | -- | -- |
| 571.68 | 1.12 | 3.84 | 0.803 | -- | -- | -- | -- | 0.838 | -- | -- | -- | -- | -- |
| 498.52 | 1.04 | 3.84 | -- | 1.32 | -- | -- | -- | 0.722 | 5.61 | -- | -- | -- | -- |
| 516.48 | 1.06 | 3.95 | -- | -- | -2.12 | -- | -- | 0.355 | -- | 1.961 | 8633 | -- | -- |
| 588.68 | 1.13 | 3.86 | -- | -- | -- | -- | -- | 0.749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 392.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 2 | 392.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 12 | 393.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 393.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 25 | 394.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 51 | 395.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 55 | 395.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 67 | 396.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 73 | 396.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 91 | 398.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 92 | 398.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 15 |
| 93 | 398.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 124 | 398.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 130 | 398.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 14 |
| 146 | 399.04 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 149 | 399.08 | radiation | 1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 151 | 399.09 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 189 | 399.28 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 191 | 399.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 200 | 399.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 210 | 399.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 21 |
| 236 | 399.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 242 | 399.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 508 | 400.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 522 | 401.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 603 | 401.90 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 607 | 402.15 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 609 | 402.18 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 611 | 402.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 612 | 402.24 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 7 |
| 616 | 402.30 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 622 | 402.35 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 654 | 402.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 701 | 402.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 714 | 402.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 725 | 402.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 726 | 402.95 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 11 | NA |
| 730 | 402.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 794 | 403.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 802 | 403.47 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 952 | 404.14 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 956 | 404.15 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 971 | 404.20 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 976 | 404.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 984 | 404.24 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 23 |