Os12g0155000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0155000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Germin-like protein precursor.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.35	(0.533)	R²	:	0.338
β₁	:	7.49	(1.63)	R²_dD	:	2.57	R²_D	:	-8.44
β₂	:	1.23	(0.126)	R²_dC	:	0.141	R²_C	:	-5.2
β₃	:	103	(20.4)	R²_dE	:	209	R²_E	:	-204
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	308	(62.1)	R²_dD*E	:	197	R²_D*E	:	-201
γ₁	:	-0.0246	(0.107)	R²_dN8	:	0.000114	R²_N8	:	-5.29
σ	:	0.926
deviance	:	395.65
__

_____

C
peak time of C	:	3.66
E
wheather	:	radiation
threshold	:	0.9208
memory length	:	1367
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	11
open length of G	:	0.949

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
386.96	0.916	6.35	7.44	1.24	103	-1.73	307	-0.0365	3.8	1	1442	11	1
467.66	1.01	3.75	-0.912	1.34	0.219	-2.37	--	-0.158	3.97	10.13	5	11.5	1.49
395.65	0.926	6.35	7.49	1.23	103	--	308	-0.0246	3.66	0.9208	1367	11	0.949
478.03	1.02	3.75	-0.914	1.44	0.373	--	--	-0.124	3.4	54.63	4	11.1	1.93
479.49	1.02	6.37	7.6	--	104	--	310	0.0084	--	1.106e-05	1419	10.7	1.12
467.97	1.01	3.75	-0.926	1.33	--	-2.35	--	-0.163	4	--	--	--	--
483.52	1.03	3.75	-0.897	1.32	--	--	--	-0.15	3.78	--	--	--	--
565.08	1.11	3.73	-0.933	--	-0.539	--	--	-0.156	--	74.67	5	12	2.63
499.38	1.04	3.73	--	1.43	0.382	--	--	-0.0204	3.38	54.61	5	11.1	1.91
578.97	1.12	3.75	-0.843	--	--	--	--	-0.115	--	--	--	--	--
504.74	1.05	3.73	--	1.3	--	--	--	-0.0502	3.79	--	--	--	--
517.36	1.06	3.79	--	--	-0.803	--	--	-0.0607	--	155	747	7.42	5.08
597.7	1.14	3.73	--	--	--	--	--	-0.0216	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	386.96	radiation	1	1440	< th	dose independent	rect.	11	1
2	386.96	radiation	1	1440	< th	dose dependent	rect.	11	1
3	395.69	radiation	1	1440	< th	dose independent	rect.	11	4
4	395.69	radiation	1	1440	< th	dose dependent	rect.	11	4
11	396.18	radiation	1	1440	< th	dose independent	rect.	13	1
12	396.18	radiation	1	1440	< th	dose dependent	rect.	13	1
22	397.00	radiation	1	1440	> th	dose independent	rect.	13	2
23	397.15	radiation	10	1440	< th	dose dependent	rect.	8	8
24	397.25	radiation	20	1440	< th	dose dependent	rect.	11	2
29	398.10	radiation	1	1440	> th	dose independent	rect.	10	5
40	399.93	radiation	20	1440	< th	dose independent	rect.	11	2
45	400.30	radiation	20	1440	< th	dose dependent	rect.	11	4
58	402.16	wind	7	4320	> th	dose independent	rect.	17	2
77	403.72	radiation	10	1440	> th	dose independent	rect.	5	10
90	403.78	radiation	10	1440	< th	dose dependent	rect.	8	16
91	403.80	radiation	10	1440	< th	dose dependent	rect.	8	12
92	403.80	radiation	10	1440	< th	dose dependent	rect.	8	14
97	403.82	radiation	10	1440	< th	dose dependent	rect.	8	19
105	403.99	radiation	10	1440	< th	dose dependent	sin	22	NA
106	404.08	wind	7	4320	> th	dose dependent	rect.	17	2
139	405.10	wind	7	4320	< th	dose independent	rect.	17	4
156	405.54	wind	7	4320	< th	dose independent	rect.	18	1
164	405.74	atmosphere	1005	720	> th	dose independent	rect.	20	4
165	405.80	wind	1	270	< th	dose independent	rect.	3	1
210	406.77	radiation	20	1440	< th	dose dependent	rect.	11	13
214	406.79	radiation	20	1440	< th	dose dependent	rect.	11	9
218	406.81	radiation	20	1440	< th	dose dependent	rect.	11	16
227	406.95	radiation	10	1440	> th	dose independent	sin	2	NA
241	407.35	atmosphere	1005	720	> th	dose independent	rect.	21	2
242	407.35	wind	7	4320	> th	dose independent	rect.	15	6
246	407.45	wind	1	720	< th	dose independent	rect.	23	1
288	407.94	radiation	20	1440	< th	dose dependent	rect.	11	22
301	408.13	radiation	10	1440	> th	dose independent	rect.	11	23
314	408.36	temperature	20	270	> th	dose independent	rect.	22	8
325	408.52	temperature	20	270	> th	dose independent	rect.	21	10
327	408.58	wind	7	4320	< th	dose independent	rect.	15	6
363	408.84	radiation	10	1440	> th	dose independent	rect.	8	23
375	408.93	radiation	1	1440	> th	dose dependent	rect.	12	1
398	409.33	atmosphere	1005	720	< th	dose independent	rect.	21	1
409	409.43	radiation	20	1440	< th	dose independent	rect.	11	13
414	409.45	radiation	20	1440	< th	dose independent	rect.	11	9
418	409.45	radiation	20	1440	< th	dose independent	rect.	11	18
420	409.47	radiation	20	1440	< th	dose independent	rect.	11	16
450	409.57	radiation	20	1440	< th	dose dependent	rect.	18	22
452	409.58	radiation	20	1440	< th	dose dependent	rect.	2	14
464	409.65	radiation	20	1440	< th	dose dependent	rect.	21	19
466	409.66	radiation	20	1440	< th	dose dependent	rect.	23	17
498	410.04	radiation	10	1440	> th	dose independent	no	NA	NA
583	410.12	wind	7	4320	> th	dose independent	rect.	15	10
585	410.14	atmosphere	1005	720	< th	dose independent	rect.	19	6
733	411.31	radiation	20	1440	< th	dose independent	rect.	11	22
741	411.34	radiation	20	1440	< th	dose dependent	rect.	2	22
749	411.36	radiation	20	1440	< th	dose dependent	rect.	2	18
775	411.42	wind	7	4320	< th	dose independent	rect.	15	10
776	411.42	radiation	20	1440	< th	dose dependent	no	NA	NA
780	411.42	radiation	20	1440	< th	dose dependent	rect.	23	21
953	412.14	radiation	1	1440	> th	dose dependent	rect.	11	5