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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0154900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Germin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0385) R2 : 0.309
β1 : -0.789 (0.141) R2dD : 0.0498 R2D : 0.0373
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.35 (0.116) R2dE : 0.228 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.23 (0.459) R2dD*E : 0.138 R2D*E : 0.0523
γ1 : 0.173 (0.0834) R2dN8 : 0.0091 R2N8 : -0.00438
σ : 0.717
deviance : 236.79
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 591
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 2.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.01 0.711 3.06 -0.775 0.303 1.26 -1.26 -3.98 0.154 6.65 1005 609 21.4 1.5
269.8 0.765 3.06 -0.775 0.303 1.26 -1.26 -- 0.154 5.58 1005 609 21.4 1.77
232.13 0.71 3.06 -0.791 0.315 1.25 -- -4.21 0.152 5.49 1005 594 21.5 1.67
275.87 0.774 3.06 -0.815 0.321 1.03 -- -- 0.0965 6.39 1005 581 21 2.93
236.79 0.717 3.06 -0.789 -- 1.35 -- -4.23 0.173 -- 1005 591 21.5 2.02
300.44 0.813 3.08 -0.732 0.631 -- -1.82 -- -0.0553 4.76 -- -- -- --
308.69 0.823 3.07 -0.725 0.619 -- -- -- -0.0464 4.27 -- -- -- --
281.02 0.781 3.06 -0.798 -- 1.06 -- -- 0.0856 -- 1005 583 21.5 2.34
292.32 0.796 3.06 -- 0.322 1.03 -- -- 0.163 5.74 1005 570 21.1 3.28
329.34 0.848 3.08 -0.701 -- -- -- -- -0.03 -- -- -- -- --
322.55 0.84 3.05 -- 0.605 -- -- -- 0.0343 4.29 -- -- -- --
296.64 0.802 3.02 -- -- 1.14 -- -- 0.204 -- 1005 563 21.3 3.38
342.29 0.864 3.06 -- -- -- -- -- 0.0477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.70 atmosphere 1005.0 720 < th dose independent rect. 21 1
2 244.70 atmosphere 1005.0 720 > th dose independent rect. 20 4
5 245.31 radiation 1.0 1440 < th dose independent rect. 11 1
6 245.31 radiation 1.0 1440 < th dose dependent rect. 11 1
7 245.83 atmosphere 1005.0 720 > th dose independent rect. 21 2
11 246.27 atmosphere 1005.0 720 < th dose independent rect. 19 4
19 247.62 wind 1.0 1440 > th dose independent rect. 23 1
21 248.21 wind 1.0 720 < th dose independent rect. 23 1
41 253.84 radiation 1.0 1440 < th dose independent rect. 12 3
43 253.84 radiation 1.0 1440 < th dose dependent rect. 12 3
45 253.85 radiation 1.0 1440 > th dose independent rect. 10 5
83 255.98 temperature 20.0 270 > th dose independent rect. 21 9
93 256.39 precipitation 0.1 270 > th dose dependent rect. 2 2
94 256.41 precipitation 0.1 270 > th dose independent rect. 2 2
119 257.88 atmosphere 1005.0 30 < th dose dependent rect. 24 8
128 258.42 wind 1.0 270 < th dose dependent rect. 23 2
174 261.16 temperature 20.0 270 < th dose independent rect. 21 10
178 261.52 atmosphere 1005.0 270 < th dose dependent rect. 1 1
190 261.90 radiation 20.0 1440 < th dose dependent rect. 11 2
217 263.03 radiation 20.0 1440 < th dose dependent rect. 11 4
218 263.07 temperature 20.0 90 > th dose independent sin 10 NA
243 263.59 radiation 20.0 1440 < th dose independent rect. 11 2
258 264.06 temperature 20.0 90 < th dose independent sin 10 NA
273 264.31 wind 7.0 4320 > th dose independent rect. 17 2
297 265.01 wind 1.0 270 < th dose dependent rect. 16 10
326 265.42 wind 1.0 270 < th dose independent rect. 3 1
328 265.42 atmosphere 1010.0 270 < th dose dependent rect. 21 8
329 265.47 atmosphere 1005.0 720 > th dose independent sin 15 NA
341 265.61 radiation 10.0 1440 < th dose dependent rect. 8 12
346 265.63 radiation 10.0 1440 < th dose dependent sin 22 NA
350 265.65 radiation 10.0 1440 < th dose dependent rect. 8 19
374 265.96 wind 7.0 4320 > th dose dependent rect. 17 2
385 266.04 wind 7.0 4320 < th dose independent rect. 18 1
401 266.27 humidity 90.0 720 > th dose dependent rect. 20 1
455 266.79 wind 1.0 30 < th dose dependent rect. 23 1
460 266.86 temperature 20.0 10 > th dose independent rect. 21 10
462 266.87 atmosphere 1005.0 720 < th dose independent sin 15 NA
527 267.44 wind 1.0 720 > th dose independent rect. 17 8
538 267.54 humidity 60.0 14400 < th dose independent rect. 6 1
540 267.54 humidity 60.0 14400 < th dose independent rect. 20 1
542 267.54 radiation 20.0 14400 > th dose independent rect. 17 1
593 267.54 humidity 60.0 14400 < th dose dependent rect. 6 1
595 267.54 humidity 60.0 14400 < th dose dependent rect. 20 1
597 267.54 radiation 20.0 14400 > th dose dependent rect. 17 1
662 267.60 wind 1.0 270 < th dose independent rect. 16 10
687 267.84 radiation 20.0 1440 < th dose dependent rect. 11 9
689 267.85 radiation 20.0 1440 < th dose dependent rect. 11 11
698 267.88 radiation 20.0 1440 < th dose dependent rect. 11 16
735 268.10 wind 1.0 270 > th dose independent sin 17 NA
761 268.32 radiation 20.0 1440 < th dose dependent rect. 11 22
770 268.39 temperature 20.0 10 > th dose independent rect. 3 1
773 268.41 atmosphere 1010.0 30 < th dose dependent sin 10 NA
813 268.63 wind 7.0 4320 < th dose independent rect. 15 6
873 268.95 wind 7.0 4320 > th dose dependent rect. 15 4
908 269.14 wind 7.0 4320 > th dose dependent rect. 15 6
953 269.40 radiation 20.0 1440 < th dose independent rect. 11 9
954 269.40 atmosphere 1005.0 270 > th dose independent rect. 19 13
955 269.40 radiation 20.0 1440 < th dose independent rect. 11 18
965 269.43 radiation 20.0 1440 < th dose independent rect. 11 16