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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0154800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Germin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0306) R2 : 0.000236
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0211 (0.0644) R2dN8 : 0.000305 R2N8 : 0.000236
σ : 0.576
deviance : 152.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.58 0.549 3.48 -0.402 0.354 -0.0519 -1.59 -1.27 -0.114 4.95 20.1 328 -- --
140.06 0.551 3.44 -0.086 0.387 -0.174 -1.26 -- -0.00995 5.21 22 231 -- --
141.83 0.555 3.48 -0.343 0.362 -0.00368 -- -0.913 -0.105 5.31 19.9 477 -- --
140.71 0.552 3.42 -0.0939 0.358 -0.278 -- -- 0.0712 5.47 23.69 771 -- --
148 0.567 3.49 -0.385 -- -0.0392 -- -1.19 -0.107 -- 20.45 1234 -- --
141.47 0.558 3.45 -0.172 0.367 -- -1.13 -- -0.0532 5.08 -- -- -- --
144.5 0.563 3.45 -0.17 0.366 -- -- -- -0.0474 5.66 -- -- -- --
146.25 0.563 3.42 -0.0487 -- -0.297 -- -- 0.0843 -- 24.2 474 -- --
140.66 0.552 3.42 -- 0.355 -0.293 -- -- 0.0904 5.01 23.7 774 -- --
151.47 0.575 3.45 -0.158 -- -- -- -- -0.0386 -- -- -- -- --
145.26 0.564 3.44 -- 0.364 -- -- -- -0.0285 5.68 -- -- -- --
146.3 0.563 3.42 -- -- -0.304 -- -- 0.0928 -- 24.2 473 -- --
152.13 0.576 3.45 -- -- -- -- -- -0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.59 radiation 1.0 1440 < th dose independent rect. 11 1
2 127.59 radiation 1.0 1440 < th dose dependent rect. 11 1
3 128.49 radiation 1.0 1440 > th dose independent rect. 11 1
4 129.23 precipitation 0.1 720 < th dose independent rect. 15 8
5 129.23 precipitation 0.1 720 < th dose dependent rect. 15 8
6 129.55 radiation 1.0 1440 < th dose independent rect. 8 5
7 129.55 radiation 1.0 1440 < th dose dependent rect. 8 5
8 129.57 temperature 20.0 10 > th dose independent rect. 2 2
13 129.85 radiation 1.0 1440 < th dose dependent rect. 8 8
14 129.94 radiation 1.0 1440 < th dose dependent rect. 11 5
16 129.98 precipitation 0.1 720 < th dose independent rect. 11 16
18 129.98 precipitation 0.1 720 < th dose dependent rect. 11 16
22 130.06 atmosphere 995.0 720 > th dose independent rect. 23 16
23 130.07 radiation 1.0 1440 < th dose independent rect. 13 1
24 130.07 radiation 1.0 1440 < th dose dependent rect. 13 1
25 130.08 radiation 1.0 1440 < th dose independent rect. 9 1
27 130.08 radiation 1.0 1440 < th dose dependent rect. 9 1
31 130.13 temperature 10.0 720 > th dose independent rect. 15 8
32 130.13 temperature 10.0 720 > th dose independent rect. 23 16
36 130.19 radiation 1.0 1440 < th dose independent rect. 11 3
38 130.21 radiation 1.0 1440 > th dose independent rect. 13 1
42 130.23 humidity 50.0 720 > th dose independent rect. 3 8
44 130.24 radiation 1.0 1440 > th dose independent rect. 11 3
45 130.24 temperature 10.0 720 > th dose independent rect. 3 8
46 130.24 atmosphere 995.0 720 > th dose independent rect. 3 8
47 130.24 temperature 10.0 720 > th dose independent rect. 11 16
61 130.34 wind 9.0 720 < th dose independent rect. 3 8
77 130.88 radiation 1.0 1440 > th dose independent rect. 9 6
84 131.07 atmosphere 1005.0 720 > th dose independent rect. 23 1
85 131.11 temperature 15.0 10 > th dose dependent rect. 2 2
88 131.16 wind 1.0 10 < th dose independent rect. 2 3
91 131.38 humidity 60.0 14400 > th dose independent rect. 24 8
96 131.62 humidity 60.0 14400 > th dose independent rect. 4 4
115 132.00 precipitation 0.1 720 < th dose independent rect. 3 8
116 132.00 precipitation 0.1 720 < th dose dependent rect. 3 8
121 132.11 atmosphere 1000.0 90 > th dose independent rect. 3 23
122 132.11 wind 3.0 10 < th dose dependent rect. 2 2
126 132.14 atmosphere 995.0 720 > th dose independent rect. 15 8
129 132.26 precipitation 0.1 90 < th dose independent rect. 3 23
130 132.26 precipitation 0.1 90 < th dose dependent rect. 3 23
131 132.27 atmosphere 995.0 720 > th dose independent rect. 11 16
132 132.27 atmosphere 1000.0 10 > th dose independent rect. 4 22
135 132.45 wind 9.0 90 < th dose independent rect. 2 1
136 132.45 temperature 10.0 90 > th dose independent rect. 2 1
138 132.45 temperature 30.0 90 < th dose independent rect. 2 1
139 132.45 humidity 50.0 90 > th dose independent rect. 2 1
142 132.45 atmosphere 995.0 90 > th dose independent rect. 2 1
143 132.45 atmosphere 1010.0 90 < th dose independent rect. 2 1
145 132.45 radiation 1.0 90 < th dose independent rect. 2 1
150 132.45 precipitation 0.1 90 < th dose independent rect. 2 1
151 132.45 temperature 10.0 90 > th dose independent rect. 3 23
152 132.45 radiation 1.0 90 < th dose dependent rect. 2 1
157 132.45 precipitation 0.1 90 < th dose dependent rect. 2 1
158 132.47 humidity 70.0 14400 > th dose independent rect. 20 12
165 132.61 humidity 60.0 14400 > th dose independent rect. 22 10
166 132.62 wind 7.0 4320 > th dose independent rect. 17 1
170 132.67 wind 7.0 4320 < th dose independent rect. 17 1
175 132.72 atmosphere 1015.0 90 < th dose dependent rect. 2 1
176 132.74 temperature 20.0 90 > th dose independent rect. 1 6
177 132.74 radiation 30.0 14400 < th dose independent rect. 17 9
182 132.81 humidity 50.0 14400 < th dose dependent rect. 9 2
184 132.82 humidity 50.0 90 > th dose dependent rect. 2 1
186 132.84 precipitation 0.1 720 < th dose independent rect. 23 16
201 132.84 precipitation 0.1 720 < th dose dependent rect. 23 16
203 132.85 temperature 20.0 270 > th dose independent rect. 23 6
204 132.86 humidity 70.0 14400 < th dose independent rect. 20 13
213 132.97 humidity 70.0 14400 < th dose dependent rect. 20 12
215 133.00 atmosphere 995.0 90 > th dose dependent rect. 2 1
216 133.03 humidity 80.0 14400 > th dose independent rect. 22 4
217 133.07 humidity 80.0 14400 < th dose independent rect. 22 1
220 133.08 radiation 1.0 14400 < th dose dependent rect. 9 1
221 133.09 radiation 1.0 1440 > th dose independent rect. 9 1
222 133.09 humidity 80.0 10 > th dose independent rect. 2 2
223 133.13 wind 1.0 90 > th dose independent rect. 2 1
224 133.14 wind 9.0 10 < th dose independent rect. 2 2
225 133.14 temperature 10.0 10 > th dose independent rect. 2 2
227 133.14 temperature 30.0 10 < th dose independent rect. 2 2
228 133.14 humidity 50.0 10 > th dose independent rect. 2 2
231 133.14 atmosphere 995.0 10 > th dose independent rect. 2 2
232 133.14 atmosphere 1010.0 10 < th dose independent rect. 2 2
234 133.14 radiation 1.0 10 < th dose independent rect. 2 2
239 133.14 temperature 10.0 10 > th dose independent rect. 4 22
240 133.14 radiation 1.0 10 < th dose dependent rect. 2 2
254 133.22 radiation 40.0 720 < th dose independent rect. 15 8
256 133.26 humidity 50.0 10 > th dose independent rect. 4 22
257 133.26 humidity 80.0 14400 < th dose dependent rect. 3 6
259 133.28 wind 9.0 90 < th dose dependent rect. 2 1
261 133.29 humidity 60.0 43200 < th dose independent rect. 11 1
264 133.29 wind 9.0 10 < th dose dependent rect. 2 2
265 133.29 humidity 50.0 10 > th dose dependent rect. 2 2
267 133.31 atmosphere 995.0 10 > th dose dependent rect. 2 2
274 133.36 humidity 70.0 14400 < th dose independent rect. 6 3
284 133.36 precipitation 0.1 10 < th dose independent rect. 4 22
287 133.36 precipitation 0.1 10 < th dose dependent rect. 4 22
289 133.38 radiation 1.0 14400 < th dose independent rect. 8 2
293 133.39 wind 9.0 90 < th dose independent rect. 3 23
305 133.47 precipitation 0.1 270 > th dose independent rect. 2 2
306 133.48 wind 5.0 43200 < th dose independent rect. 12 2
308 133.48 precipitation 0.1 270 > th dose dependent rect. 2 2
312 133.50 humidity 50.0 14400 < th dose independent rect. 9 1
319 133.53 radiation 10.0 4320 < th dose dependent rect. 24 5
323 133.56 humidity 60.0 14400 < th dose independent rect. 6 1
325 133.56 humidity 60.0 14400 < th dose independent rect. 20 1
327 133.56 radiation 20.0 14400 > th dose independent rect. 17 1
333 133.56 precipitation 0.1 10 < th dose independent rect. 2 2
380 133.56 humidity 60.0 14400 < th dose dependent rect. 6 1
382 133.56 humidity 60.0 14400 < th dose dependent rect. 20 1
384 133.56 radiation 20.0 14400 > th dose dependent rect. 17 1
391 133.56 precipitation 0.1 10 < th dose dependent rect. 2 2
445 133.57 wind 1.0 30 > th dose independent rect. 4 22
464 133.59 wind 9.0 10 < th dose independent rect. 4 22
471 133.60 radiation 40.0 14400 > th dose independent rect. 15 1
500 133.64 radiation 1.0 4320 < th dose independent rect. 4 1
503 133.66 wind 5.0 43200 > th dose independent rect. 12 2
505 133.67 radiation 1.0 14400 > th dose independent rect. 8 2
511 133.70 precipitation 0.1 14400 > th dose independent rect. 2 4
517 133.72 precipitation 0.1 14400 > th dose dependent rect. 2 4
522 133.73 radiation 20.0 43200 < th dose independent rect. 24 6
547 133.78 precipitation 0.1 14400 > th dose independent rect. 3 2
549 133.78 precipitation 0.1 14400 > th dose dependent rect. 3 2
557 133.80 humidity 80.0 14400 < th dose independent rect. 22 3
558 133.81 wind 9.0 43200 > th dose independent rect. 13 1
590 133.82 wind 9.0 14400 > th dose dependent rect. 14 2
593 133.83 wind 9.0 1440 < th dose independent rect. 3 2
594 133.83 temperature 10.0 1440 > th dose independent rect. 3 2
597 133.83 temperature 30.0 1440 < th dose independent rect. 3 2
601 133.83 humidity 50.0 1440 > th dose independent rect. 3 2
610 133.83 atmosphere 995.0 1440 > th dose independent rect. 3 2
611 133.83 radiation 20.0 1440 < th dose independent rect. 3 2
624 133.83 temperature 10.0 1440 > th dose independent rect. 5 22
648 133.85 humidity 60.0 43200 > th dose independent rect. 8 4
667 133.88 humidity 80.0 14400 < th dose independent rect. 21 5
671 133.89 radiation 40.0 14400 > th dose dependent rect. 15 1
688 133.90 wind 9.0 43200 < th dose independent rect. 13 1
691 133.90 precipitation 0.1 14400 < th dose independent rect. 2 4
693 133.90 precipitation 0.1 14400 < th dose dependent rect. 2 4
699 133.92 radiation 1.0 14400 < th dose independent rect. 8 5
715 133.96 wind 1.0 90 > th dose dependent rect. 2 1
716 133.96 radiation 10.0 4320 < th dose dependent rect. 4 1
717 133.96 humidity 60.0 43200 < th dose dependent rect. 10 6
721 133.98 atmosphere 1015.0 10 < th dose dependent rect. 2 2
738 134.03 wind 1.0 720 > th dose independent rect. 15 8
758 134.07 humidity 60.0 43200 < th dose dependent sin 1 NA
818 134.12 wind 9.0 43200 > th dose independent rect. 13 3
819 134.12 radiation 1.0 4320 < th dose independent rect. 24 5
822 134.12 wind 1.0 30 > th dose independent rect. 23 23
823 134.12 humidity 90.0 720 > th dose dependent rect. 20 1
825 134.12 humidity 60.0 43200 < th dose dependent rect. 11 3
827 134.12 radiation 10.0 4320 < th dose dependent rect. 19 10
844 134.13 temperature 20.0 90 > th dose independent rect. 11 20
848 134.13 humidity 60.0 43200 < th dose dependent rect. 18 22
850 134.14 humidity 60.0 43200 > th dose independent rect. 19 17
852 134.14 wind 5.0 4320 > th dose dependent rect. 17 2
859 134.15 radiation 1.0 14400 > th dose independent rect. 8 5
880 134.17 radiation 20.0 14400 < th dose independent rect. 17 13
903 134.20 precipitation 0.1 14400 < th dose independent rect. 3 2
908 134.20 wind 9.0 4320 > th dose dependent rect. 16 1
909 134.20 precipitation 0.1 14400 < th dose dependent rect. 3 2
923 134.22 wind 1.0 270 < th dose dependent rect. 24 1
994 134.26 atmosphere 1015.0 720 < th dose independent rect. 3 8