Os12g0153900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0153900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.83 | 0.512 | 14 | 0.134 | 1.26 | 1.75 | -0.548 | -2.2 | -0.502 | 24 | 26.64 | 648 | -- | -- |
| 119.6 | 0.509 | 14 | 0.426 | 1.26 | 1.51 | -0.58 | -- | -0.438 | 23.8 | 26.6 | 647 | -- | -- |
| 119.85 | 0.51 | 14 | 0.029 | 1.28 | 1.94 | -- | -3.94 | -0.476 | 23.9 | 27.55 | 651 | -- | -- |
| 121.16 | 0.513 | 14 | 0.429 | 1.27 | 1.52 | -- | -- | -0.457 | 23.9 | 26.51 | 629 | -- | -- |
| 186.11 | 0.635 | 14.1 | -0.366 | -- | 2.23 | -- | -3.27 | -0.767 | -- | 24.49 | 870 | -- | -- |
| 163.86 | 0.6 | 14 | 0.683 | 1.53 | -- | -0.397 | -- | -0.424 | 22.5 | -- | -- | -- | -- |
| 164.5 | 0.601 | 14 | 0.699 | 1.53 | -- | -- | -- | -0.423 | 22.5 | -- | -- | -- | -- |
| 192.23 | 0.646 | 14 | 0.212 | -- | 1.96 | -- | -- | -0.639 | -- | 24.44 | 826 | -- | -- |
| 125.83 | 0.522 | 14 | -- | 1.25 | 1.57 | -- | -- | -0.516 | 0.0173 | 26.25 | 646 | -- | -- |
| 307.65 | 0.82 | 14 | 0.725 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 177.37 | 0.623 | 14 | -- | 1.53 | -- | -- | -- | -0.501 | 22.5 | -- | -- | -- | -- |
| 193.44 | 0.648 | 14 | -- | -- | 2.06 | -- | -- | -0.655 | -- | 24.37 | 833 | -- | -- |
| 321.52 | 0.837 | 14 | -- | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.18 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 2 | 114.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 26 | 116.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 28 | 117.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 34 | 117.38 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 8 |
| 44 | 117.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 54 | 117.83 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 56 | 117.88 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 8 |
| 65 | 118.12 | temperature | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 69 | 118.22 | temperature | 25 | 270 | > th | dose dependent | sin | 16 | NA |
| 72 | 118.26 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 6 |
| 86 | 118.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 91 | 118.52 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 21 |
| 103 | 118.82 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 113 | 118.95 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 123 | 119.10 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 124 | 119.11 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 128 | 119.18 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 15 |
| 144 | 119.42 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 152 | 119.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 182 | 119.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 194 | 120.03 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 198 | 120.06 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 203 | 120.15 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 233 | 120.29 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 8 |
| 246 | 120.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 251 | 120.41 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 252 | 120.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 254 | 120.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 264 | 120.48 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 267 | 120.49 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 318 | 120.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 342 | 120.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 455 | 121.24 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 598 | 121.40 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 16 |
| 616 | 121.50 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 20 |
| 629 | 121.61 | humidity | 50 | 720 | < th | dose independent | rect. | 16 | 1 |
| 633 | 121.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 637 | 121.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 659 | 121.68 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 23 |
| 661 | 121.69 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 22 |
| 681 | 121.75 | temperature | 30 | 720 | < th | dose independent | sin | 17 | NA |
| 683 | 121.75 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 5 |
| 705 | 121.79 | temperature | 30 | 720 | > th | dose independent | sin | 17 | NA |
| 707 | 121.79 | humidity | 50 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 715 | 121.84 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 745 | 121.93 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 791 | 122.14 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 827 | 122.23 | radiation | 1 | 270 | < th | dose independent | sin | 15 | NA |
| 834 | 122.27 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 835 | 122.27 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 855 | 122.36 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 870 | 122.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 874 | 122.40 | humidity | 70 | 270 | < th | dose independent | rect. | 14 | 6 |
| 888 | 122.41 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 900 | 122.46 | radiation | 1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 921 | 122.50 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 937 | 122.58 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 938 | 122.58 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 960 | 122.58 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |