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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0152900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic-leucine zipper (bZIP) transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.05) R2 : 0.636
β1 : 0.921 (0.188) R2dD : 0.0193 R2D : -0.0488
β2 : 1.54 (0.123) R2dC : 0.117 R2C : -0.0207
β3 : -3.58 (0.215) R2dE : 0.293 R2E : 0.0533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10 (0.743) R2dD*E : 0.188 R2D*E : 0.00297
γ1 : 1.6 (0.102) R2dN8 : 0.27 R2N8 : 0.0525
σ : 0.882
deviance : 358.28
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_____
C
peak time of C : 18.7
E
wheather : radiation
threshold : 41.87
memory length : 5565
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.13
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
359.26 0.891 4.96 0.804 1.48 -3.52 0.145 -9.8 1.64 18.7 40.73 5569 7.13 --
456.53 0.995 5.12 1.54 1.29 -3.02 -0.235 -- 1.76 18.6 -3.366 5276 6.67 --
358.28 0.882 4.98 0.921 1.54 -3.58 -- -10 1.6 18.7 41.87 5565 7.13 --
405.22 0.938 5.08 1.79 1.26 -3.11 -- -- 1.86 18.5 -5.182 2697 7.04 --
469.58 1.01 4.93 0.824 -- -3.64 -- -9.99 1.61 -- 42.68 5657 7.54 --
648.4 1.19 5.21 2.22 1.54 -- 0.731 -- 1.31 17.9 -- -- -- --
649.61 1.19 5.21 2.21 1.55 -- -- -- 1.31 18 -- -- -- --
400.56 0.932 4.99 1.89 -- -4.3 -- -- 2.13 -- -17.84 2645 8.25 --
478.19 1.02 5.01 -- 1.23 -3.6 -- -- 2.03 18.6 -6.883 9818 7.41 --
773.87 1.3 5.18 2.16 -- -- -- -- 1.27 -- -- -- -- --
778.28 1.3 5.26 -- 1.52 -- -- -- 1.06 18.1 -- -- -- --
484.66 1.03 5.06 -- -- -4.61 -- -- 2.17 -- -18.78 9582 7.18 --
897.41 1.4 5.24 -- -- -- -- -- 1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.04 temperature 25.0 14400 > th dose independent rect. 2 6
3 355.97 temperature 25.0 14400 > th dose independent rect. 23 10
5 356.15 temperature 25.0 14400 < th dose independent rect. 1 7
9 356.54 temperature 30.0 14400 < th dose independent rect. 11 2
12 356.88 temperature 30.0 14400 > th dose independent rect. 12 1
15 357.09 temperature 25.0 14400 < th dose independent rect. 24 9
16 357.14 temperature 30.0 14400 > th dose independent rect. 11 3
21 357.48 temperature 25.0 14400 > th dose dependent rect. 22 10
22 357.61 temperature 25.0 14400 > th dose dependent rect. 2 5
35 358.42 wind 9.0 43200 < th dose dependent rect. 3 1
56 359.49 temperature 25.0 14400 > th dose dependent sin 10 NA
57 359.53 temperature 25.0 14400 > th dose dependent rect. 22 2
63 359.75 wind 1.0 43200 > th dose dependent rect. 3 1
74 360.13 temperature 30.0 14400 > th dose dependent rect. 15 1
76 360.25 temperature 30.0 14400 < th dose independent rect. 11 16
78 360.26 temperature 30.0 14400 < th dose independent rect. 11 14
81 360.27 temperature 30.0 14400 < th dose independent rect. 11 8
86 360.28 temperature 30.0 14400 < th dose independent rect. 11 12
88 360.28 temperature 30.0 14400 < th dose independent rect. 11 21
106 360.73 temperature 30.0 14400 > th dose independent rect. 11 8
121 360.74 precipitation 0.1 43200 < th dose independent rect. 4 14
122 360.74 precipitation 0.1 43200 < th dose dependent rect. 4 14
123 360.75 precipitation 0.1 43200 > th dose independent rect. 4 14
146 360.89 temperature 30.0 14400 > th dose dependent rect. 14 4
231 361.57 temperature 30.0 14400 > th dose dependent sin 14 NA
313 362.18 temperature 30.0 14400 < th dose independent rect. 17 22
324 362.36 temperature 30.0 14400 < th dose independent sin 19 NA
384 362.81 temperature 30.0 14400 > th dose independent sin 18 NA
399 362.95 temperature 25.0 43200 < th dose dependent rect. 9 1
400 362.96 temperature 30.0 14400 > th dose independent rect. 17 21
405 363.05 temperature 25.0 14400 < th dose independent rect. 5 1
421 363.33 temperature 25.0 14400 > th dose independent sin 9 NA
434 363.34 temperature 30.0 14400 < th dose independent rect. 22 21
442 363.35 temperature 30.0 14400 < th dose independent rect. 24 19
453 363.35 temperature 30.0 14400 < th dose independent rect. 2 23
461 363.36 temperature 30.0 14400 < th dose independent no NA NA
471 363.36 temperature 30.0 14400 < th dose independent rect. 2 17
495 363.37 temperature 30.0 14400 < th dose independent rect. 2 21
532 363.53 humidity 90.0 43200 > th dose dependent rect. 9 1
599 364.03 temperature 30.0 14400 < th dose independent rect. 22 17
601 364.04 temperature 30.0 14400 < th dose independent rect. 24 15
608 364.06 temperature 30.0 14400 > th dose independent no NA NA
707 364.07 temperature 30.0 14400 < th dose independent rect. 2 13
733 364.21 humidity 90.0 43200 > th dose independent rect. 9 1
793 364.69 precipitation 0.1 43200 < th dose independent rect. 4 17
795 364.69 precipitation 0.1 43200 < th dose dependent rect. 4 17
899 365.03 temperature 25.0 14400 < th dose independent sin 8 NA
954 365.42 humidity 80.0 43200 > th dose independent rect. 11 2
955 365.42 radiation 1.0 14400 < th dose dependent rect. 18 10
963 365.48 precipitation 0.1 43200 > th dose independent rect. 15 2
965 365.50 temperature 30.0 14400 < th dose independent rect. 17 1
967 365.52 temperature 30.0 14400 > th dose independent rect. 16 2
985 365.57 radiation 1.0 14400 < th dose dependent rect. 18 2