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Os12g0152600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.32 (0.0192) R2 : 0.559
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.962 (0.0468) R2dC : 0.411 R2C : 0.365
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.504 (0.0404) R2dN8 : 0.194 R2N8 : 0.148
σ : 0.362
deviance : 59.82
__
_____
C
peak time of C : 9.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.68 0.296 9.28 0.103 0.922 1.03 0.761 -0.501 -0.315 10.3 24.37 383 -- --
39.98 0.294 9.29 0.028 0.923 1.12 0.745 -- -0.333 10.3 24.08 385 -- --
41.97 0.302 9.28 0.125 0.929 1.03 -- -0.461 -0.317 10.3 24.36 361 -- --
42.18 0.303 9.29 0.0547 0.923 1.1 -- -- -0.336 10.3 23.99 382 -- --
75.26 0.404 9.27 0.305 -- 1.5 -- -0.587 -0.188 -- 29 737 -- --
56.56 0.353 9.33 -0.245 0.964 -- 0.72 -- -0.529 9.95 -- -- -- --
58.57 0.358 9.33 -0.218 0.961 -- -- -- -0.528 9.9 -- -- -- --
75.55 0.405 9.28 0.194 -- 1.51 -- -- -0.217 -- 28.7 738 -- --
42.26 0.303 9.29 -- 0.922 1.08 -- -- -0.344 10.2 23.99 382 -- --
113.96 0.499 9.35 -0.229 -- -- -- -- -0.528 -- -- -- -- --
59.82 0.362 9.32 -- 0.962 -- -- -- -0.504 9.92 -- -- -- --
76.43 0.407 9.29 -- -- 1.44 -- -- -0.248 -- 28.86 735 -- --
115.34 0.501 9.35 -- -- -- -- -- -0.502 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.73 humidity 90.0 14400 > th dose dependent rect. 5 1
4 37.19 humidity 90.0 14400 < th dose independent rect. 23 1
7 37.50 wind 3.0 43200 < th dose dependent rect. 20 4
8 37.50 humidity 90.0 14400 > th dose dependent rect. 24 15
22 37.74 radiation 1.0 14400 < th dose independent rect. 6 1
23 37.75 wind 9.0 43200 > th dose independent rect. 8 9
25 37.77 radiation 1.0 14400 > th dose independent rect. 6 1
30 37.80 wind 9.0 43200 < th dose independent rect. 8 8
37 37.83 radiation 1.0 14400 < th dose dependent rect. 6 1
39 37.85 wind 9.0 43200 < th dose dependent rect. 22 1
43 37.92 wind 3.0 43200 < th dose independent rect. 20 2
51 37.97 wind 9.0 43200 > th dose independent sin 23 NA
52 37.97 humidity 90.0 14400 > th dose independent rect. 23 2
54 37.97 wind 7.0 43200 > th dose dependent rect. 8 9
57 38.00 wind 3.0 43200 < th dose independent rect. 11 1
58 38.00 wind 9.0 43200 > th dose independent rect. 9 6
59 38.01 wind 3.0 43200 > th dose independent rect. 11 1
63 38.03 wind 1.0 43200 > th dose dependent rect. 22 1
64 38.04 wind 3.0 43200 > th dose independent rect. 20 2
79 38.10 wind 9.0 43200 < th dose independent sin 23 NA
81 38.10 wind 7.0 43200 > th dose dependent rect. 9 7
84 38.11 wind 3.0 43200 < th dose independent rect. 9 3
87 38.11 wind 9.0 43200 < th dose independent rect. 9 5
92 38.12 wind 3.0 43200 > th dose independent rect. 9 3
95 38.13 precipitation 0.1 43200 > th dose independent rect. 6 1
96 38.13 precipitation 0.1 43200 < th dose independent rect. 3 5
101 38.13 precipitation 0.1 43200 > th dose dependent rect. 6 1
102 38.13 precipitation 0.1 43200 < th dose dependent rect. 3 5
106 38.14 precipitation 0.1 43200 < th dose independent rect. 6 1
108 38.14 humidity 90.0 14400 > th dose dependent sin 5 NA
109 38.14 precipitation 0.1 43200 < th dose dependent rect. 6 1
113 38.15 precipitation 0.1 43200 > th dose independent rect. 2 6
114 38.15 radiation 1.0 14400 < th dose independent rect. 6 10
118 38.16 radiation 1.0 14400 > th dose independent rect. 6 10
123 38.17 wind 9.0 43200 > th dose independent rect. 8 14
131 38.18 radiation 1.0 14400 < th dose independent rect. 6 7
135 38.19 precipitation 0.1 43200 > th dose independent rect. 5 3
136 38.19 radiation 1.0 14400 > th dose independent rect. 6 7
137 38.19 wind 7.0 43200 > th dose dependent sin 23 NA
150 38.23 precipitation 0.1 43200 < th dose independent rect. 5 3
153 38.23 precipitation 0.1 43200 > th dose dependent rect. 5 3
154 38.23 precipitation 0.1 43200 < th dose dependent rect. 5 3
165 38.25 humidity 60.0 43200 < th dose independent rect. 8 1
200 38.30 atmosphere 1015.0 43200 > th dose independent rect. 15 9
201 38.30 humidity 60.0 43200 < th dose dependent rect. 7 3
202 38.30 humidity 90.0 14400 > th dose dependent rect. 23 8
214 38.32 wind 9.0 43200 < th dose independent rect. 8 16
217 38.33 atmosphere 1015.0 43200 > th dose independent rect. 23 1
256 38.37 humidity 60.0 43200 > th dose independent rect. 8 1
264 38.37 atmosphere 1015.0 43200 > th dose dependent rect. 23 1
275 38.38 atmosphere 1015.0 43200 < th dose independent rect. 15 9
281 38.38 wind 9.0 43200 > th dose independent rect. 9 22
285 38.39 atmosphere 1015.0 43200 < th dose independent rect. 23 1
289 38.39 atmosphere 1015.0 43200 > th dose dependent rect. 21 3
290 38.39 humidity 60.0 43200 < th dose dependent rect. 20 14
292 38.40 wind 1.0 43200 < th dose independent rect. 23 3
303 38.40 precipitation 0.1 43200 > th dose dependent rect. 2 6
326 38.43 wind 1.0 43200 > th dose independent rect. 23 3
370 38.47 wind 7.0 43200 > th dose independent rect. 18 1
388 38.48 wind 7.0 43200 > th dose dependent rect. 10 3
401 38.50 atmosphere 1015.0 43200 > th dose independent rect. 19 2
429 38.52 wind 9.0 43200 > th dose independent rect. 24 17
453 38.54 temperature 20.0 14400 > th dose independent rect. 21 1
499 38.57 temperature 20.0 14400 < th dose independent rect. 21 1
502 38.57 atmosphere 1015.0 43200 < th dose independent rect. 17 4
537 38.58 wind 9.0 43200 < th dose independent rect. 21 20
549 38.59 atmosphere 1015.0 43200 < th dose independent sin 14 NA
589 38.61 atmosphere 1015.0 43200 > th dose independent sin 15 NA
632 38.62 wind 3.0 43200 > th dose dependent rect. 9 3
765 38.67 humidity 60.0 43200 < th dose dependent rect. 2 8
845 38.70 wind 7.0 43200 > th dose dependent rect. 9 23
868 38.72 wind 9.0 43200 > th dose independent rect. 10 3
896 38.73 wind 9.0 43200 > th dose independent rect. 21 20
902 38.73 wind 1.0 43200 > th dose dependent rect. 8 16
914 38.74 humidity 60.0 43200 < th dose independent rect. 20 14
921 38.74 wind 9.0 43200 > th dose independent rect. 18 23
941 38.75 wind 9.0 43200 > th dose independent rect. 21 22
974 38.76 radiation 1.0 14400 < th dose dependent rect. 5 7
978 38.76 wind 7.0 43200 > th dose dependent rect. 21 21
980 38.77 wind 7.0 43200 < th dose independent rect. 18 1
988 38.77 radiation 1.0 14400 < th dose independent rect. 4 12
991 38.77 radiation 1.0 14400 < th dose independent rect. 24 16