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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0152100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Esterase/lipase/thioesterase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0362) R2 : 0.412
β1 : -1.31 (0.136) R2dD : 0.131 R2D : 0.0162
β2 : 0.711 (0.0883) R2dC : 0.0882 R2C : 0.00724
β3 : 1.76 (0.109) R2dE : 0.372 R2E : 0.19
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.216 (0.0773) R2dN8 : 0.0135 R2N8 : 0.00211
σ : 0.677
deviance : 211.38
__
_____
C
peak time of C : 12.5
E
wheather : temperature
threshold : 26.98
memory length : 1168
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.31 0.667 4.24 -2.4 0.677 2.19 -1.36 -4.82 -0.477 12.9 26.6 1234 -- --
206.31 0.669 4.09 -1.31 0.689 1.69 -1.26 -- -0.246 12.8 26.45 1178 -- --
208.66 0.673 4.22 -2.27 0.686 2.15 -- -4.17 -0.408 12.7 26.9 1224 -- --
211.38 0.677 4.1 -1.31 0.711 1.76 -- -- -0.216 12.5 26.98 1168 -- --
226.16 0.7 4.24 -2.48 -- 2.26 -- -5.03 -0.441 -- 26.83 1600 -- --
320.08 0.839 4.1 -0.747 0.378 -- -1.65 -- -0.205 13.3 -- -- -- --
330.92 0.852 4.1 -0.806 0.383 -- -- -- -0.216 12.5 -- -- -- --
233.49 0.712 4.12 -1.34 -- 1.64 -- -- -0.264 -- 26.69 1544 -- --
252.3 0.74 4.05 -- 0.636 1.49 -- -- 0.034 12.6 28.27 1160 -- --
340.12 0.862 4.11 -0.819 -- -- -- -- -0.222 -- -- -- -- --
348.03 0.873 4.08 -- 0.395 -- -- -- -0.126 12.6 -- -- -- --
276.1 0.774 4.06 -- -- 1.52 -- -- 0.0163 -- 28.26 1652 -- --
357.82 0.883 4.09 -- -- -- -- -- -0.131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.00 temperature 25 1440 > th dose dependent rect. 15 9
2 205.03 temperature 25 1440 > th dose dependent rect. 15 18
6 205.35 temperature 25 1440 > th dose dependent rect. 13 20
10 205.64 temperature 25 1440 > th dose dependent sin 16 NA
17 205.81 temperature 25 1440 > th dose dependent rect. 13 11
35 206.15 temperature 25 1440 > th dose dependent rect. 11 13
90 206.82 temperature 25 1440 > th dose dependent rect. 6 18
147 207.27 temperature 25 1440 > th dose dependent no NA NA
173 207.49 temperature 25 1440 > th dose dependent rect. 20 23
189 207.70 temperature 25 1440 > th dose dependent rect. 17 23
341 211.69 temperature 30 1440 < th dose independent rect. 14 22
343 211.82 temperature 30 1440 < th dose independent rect. 18 22
350 212.02 temperature 30 1440 < th dose independent rect. 9 7
352 212.25 temperature 30 1440 > th dose independent rect. 14 22
363 212.54 temperature 30 1440 < th dose independent rect. 6 10
371 212.63 temperature 30 1440 < th dose independent rect. 23 17
385 213.05 temperature 30 1440 < th dose independent rect. 9 15
389 213.07 temperature 30 1440 < th dose independent rect. 9 13
397 213.12 temperature 30 1440 < th dose independent rect. 9 22
418 213.40 temperature 30 1440 < th dose independent sin 23 NA
420 213.42 temperature 30 1440 < th dose independent rect. 6 18
427 213.45 temperature 30 1440 < th dose independent rect. 6 16
469 213.51 temperature 30 1440 < th dose independent rect. 23 23
470 213.52 temperature 30 1440 < th dose independent no NA NA
480 213.53 temperature 30 1440 < th dose independent rect. 21 23
552 213.95 temperature 30 1440 > th dose independent rect. 18 22
576 214.09 temperature 30 1440 > th dose independent rect. 9 7
616 214.29 temperature 30 1440 < th dose independent rect. 14 10
625 214.35 temperature 30 1440 < th dose independent rect. 14 8
630 214.39 temperature 30 1440 > th dose independent rect. 14 5
648 214.42 temperature 30 1440 < th dose independent rect. 14 17
651 214.46 temperature 30 1440 > th dose independent rect. 9 10
878 215.02 temperature 30 1440 > th dose independent no NA NA
982 215.06 temperature 30 1440 > th dose independent sin 22 NA