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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0150500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0364) R2 : 0.0926
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.65 (0.245) R2dE : 0.0922 R2E : 0.091
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0789 (0.0766) R2dN8 : 0.0016 R2N8 : 0.000336
σ : 0.683
deviance : 215.26
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -14.25
memory length : 31
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.32
open length of G : 23.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.79 0.656 3.27 0.867 0.562 -2.02 -0.328 2.57 0.122 12.8 4.335 36 3.05 23.4
195.27 0.651 3.32 0.632 0.567 -2.29 0.0213 -- 0.0327 12.8 -0.6072 31 3.26 22.9
194.4 0.649 3.28 0.848 0.581 -2.21 -- 2.3 0.122 12.8 1.313 31 3.03 23.5
195.08 0.651 3.31 0.631 0.579 -2.27 -- -- 0.0494 12.8 -1.326 29 3.22 22.8
208.35 0.672 3.29 0.752 -- -1.56 -- 2.87 0.119 -- -1.688 48 3.02 23
228.72 0.709 3.32 0.377 0.272 -- 0.189 -- -0.0179 9.03 -- -- -- --
228.84 0.708 3.32 0.384 0.271 -- -- -- -0.0176 9.09 -- -- -- --
210.6 0.676 3.31 0.539 -- -1.6 -- -- 0.0408 -- -1.589 33 3.27 22.7
204.48 0.67 3.33 -- 0.512 -2.06 -- -- -0.0492 12.4 -4.446 18 3.02 23
233.07 0.713 3.33 0.383 -- -- -- -- -0.0161 -- -- -- -- --
232.72 0.714 3.33 -- 0.271 -- -- -- -0.0603 8.98 -- -- -- --
215.26 0.683 3.32 -- -- -1.65 -- -- -0.0789 -- -14.25 31 3.32 23.2
236.94 0.718 3.34 -- -- -- -- -- -0.0586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.17 temperature 10.0 30 > th dose dependent rect. 3 23
3 201.29 humidity 90.0 14400 > th dose dependent rect. 21 3
9 202.84 wind 9.0 10 < th dose independent rect. 3 23
16 203.34 temperature 10.0 720 > th dose dependent rect. 3 7
19 203.63 radiation 1.0 43200 < th dose dependent rect. 3 1
32 204.63 temperature 25.0 90 > th dose dependent rect. 1 3
40 205.04 humidity 90.0 4320 > th dose independent rect. 18 1
44 205.28 humidity 80.0 4320 < th dose independent rect. 18 2
56 205.59 atmosphere 1005.0 30 > th dose independent rect. 2 1
59 205.64 atmosphere 1005.0 30 > th dose dependent rect. 2 1
63 205.68 wind 3.0 30 < th dose independent rect. 2 1
64 205.68 temperature 25.0 90 > th dose independent rect. 1 3
67 205.71 wind 1.0 30 > th dose independent rect. 2 1
71 205.71 wind 5.0 30 < th dose dependent rect. 2 1
76 205.74 humidity 80.0 30 > th dose independent rect. 2 1
78 205.75 temperature 10.0 30 > th dose independent rect. 2 1
80 205.75 temperature 30.0 30 < th dose independent rect. 2 1
81 205.75 humidity 50.0 30 > th dose independent rect. 2 1
85 205.75 atmosphere 1010.0 30 < th dose independent rect. 2 1
87 205.75 radiation 1.0 30 < th dose independent rect. 2 1
92 205.75 precipitation 0.1 30 < th dose independent rect. 2 1
93 205.75 temperature 10.0 30 > th dose independent rect. 3 23
94 205.75 temperature 30.0 30 < th dose dependent rect. 2 1
95 205.75 radiation 1.0 30 < th dose dependent rect. 2 1
100 205.75 precipitation 0.1 30 < th dose dependent rect. 2 1
102 205.76 temperature 10.0 30 > th dose dependent rect. 2 1
105 205.76 humidity 50.0 30 > th dose dependent rect. 2 1
118 205.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
121 205.96 precipitation 0.1 30 < th dose independent rect. 3 23
123 205.96 precipitation 0.1 30 < th dose dependent rect. 3 23
124 205.98 precipitation 0.1 14400 < th dose independent rect. 23 1
125 205.98 precipitation 0.1 14400 < th dose dependent rect. 23 1
136 206.10 humidity 90.0 14400 > th dose independent rect. 21 3
141 206.16 humidity 50.0 4320 > th dose dependent rect. 17 10
177 206.28 humidity 90.0 14400 < th dose independent rect. 20 4
183 206.33 humidity 80.0 4320 > th dose independent rect. 17 4
188 206.36 humidity 80.0 4320 > th dose independent rect. 17 10
190 206.37 temperature 10.0 720 > th dose dependent rect. 3 12
201 206.45 humidity 50.0 4320 > th dose dependent rect. 18 6
211 206.56 humidity 90.0 14400 > th dose dependent sin 14 NA
213 206.59 humidity 90.0 14400 < th dose independent rect. 21 2
219 206.60 precipitation 0.1 14400 > th dose independent rect. 23 1
221 206.60 precipitation 0.1 14400 > th dose dependent rect. 23 1
245 206.79 humidity 50.0 4320 > th dose dependent rect. 21 2
270 206.95 humidity 80.0 4320 < th dose independent rect. 17 10
273 206.97 humidity 90.0 14400 > th dose independent rect. 22 1
281 206.99 humidity 90.0 4320 < th dose dependent rect. 17 10
282 207.00 atmosphere 995.0 30 > th dose independent rect. 3 23
305 207.08 temperature 30.0 720 < th dose dependent rect. 24 12
308 207.11 temperature 10.0 720 > th dose dependent rect. 22 17
326 207.23 temperature 15.0 4320 > th dose independent rect. 12 1
346 207.36 humidity 70.0 4320 < th dose independent rect. 14 1
365 207.47 wind 9.0 1440 < th dose independent rect. 3 1
366 207.47 temperature 10.0 1440 > th dose independent rect. 3 1
369 207.47 temperature 30.0 1440 < th dose independent rect. 3 1
373 207.47 humidity 50.0 1440 > th dose independent rect. 3 1
382 207.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
383 207.47 radiation 1.0 1440 < th dose independent rect. 3 1
403 207.47 temperature 10.0 1440 > th dose independent rect. 4 23
406 207.47 radiation 1.0 1440 < th dose dependent rect. 3 1
426 207.53 atmosphere 1010.0 30 < th dose independent rect. 3 23
478 207.74 humidity 90.0 4320 < th dose dependent rect. 17 7
561 208.03 atmosphere 1015.0 720 < th dose independent rect. 3 16
579 208.09 humidity 50.0 4320 > th dose dependent sin 14 NA
609 208.18 humidity 90.0 4320 < th dose dependent rect. 18 1
655 208.31 humidity 70.0 4320 > th dose independent rect. 14 1
699 208.42 humidity 50.0 4320 > th dose dependent rect. 15 16
735 208.51 temperature 15.0 720 > th dose independent rect. 3 16
751 208.55 temperature 10.0 10 > th dose dependent rect. 12 23
756 208.56 temperature 15.0 270 > th dose dependent rect. 3 20
804 208.68 temperature 15.0 720 > th dose independent rect. 3 7
839 208.75 temperature 15.0 720 > th dose independent rect. 7 8
842 208.75 humidity 90.0 14400 > th dose dependent rect. 5 21
907 208.89 radiation 1.0 4320 > th dose independent rect. 17 19
931 208.95 humidity 90.0 4320 < th dose dependent sin 14 NA
977 209.05 radiation 1.0 4320 < th dose independent rect. 17 19
989 209.07 humidity 90.0 14400 > th dose dependent no NA NA
991 209.08 temperature 10.0 720 > th dose dependent sin 6 NA