Os12g0149700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase KIPK.
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Os12g0149700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase KIPK.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 324.09 | 0.846 | 4.89 | 1.53 | 1.13 | 2.32 | -0.284 | 9.16 | -0.0705 | 20.8 | 10.95 | 1392 | -- | -- |
| 338.62 | 0.857 | 5.08 | -0.39 | 1.08 | 1.89 | -0.0449 | -- | -0.343 | 20.9 | 25.25 | 1415 | -- | -- |
| 324.36 | 0.839 | 4.89 | 1.55 | 1.13 | 2.31 | -- | 9.17 | -0.0683 | 20.8 | 10.78 | 1396 | -- | -- |
| 338.13 | 0.856 | 5.11 | -0.393 | 1.12 | 1.93 | -- | -- | -0.399 | 20.7 | 25.07 | 1396 | -- | -- |
| 362.95 | 0.887 | 4.93 | 1.11 | -- | 3.01 | -- | 8.53 | -0.228 | -- | 14.34 | 838 | -- | -- |
| 493.69 | 1.04 | 5.06 | 0.272 | 1.16 | -- | -0.154 | -- | -0.167 | 21.4 | -- | -- | -- | -- |
| 493.78 | 1.04 | 5.06 | 0.277 | 1.16 | -- | -- | -- | -0.166 | 21.4 | -- | -- | -- | -- |
| 391.43 | 0.921 | 5.13 | -0.431 | -- | 2.52 | -- | -- | -0.632 | -- | 21.6 | 889 | -- | -- |
| 341.95 | 0.861 | 5.1 | -- | 1.12 | 1.85 | -- | -- | -0.335 | 20.6 | 25.23 | 1395 | -- | -- |
| 572.34 | 1.12 | 5.02 | 0.284 | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
| 495.8 | 1.04 | 5.06 | -- | 1.16 | -- | -- | -- | -0.197 | 21.4 | -- | -- | -- | -- |
| 395.95 | 0.927 | 5.11 | -- | -- | 2.4 | -- | -- | -0.556 | -- | 22.08 | 897 | -- | -- |
| 574.46 | 1.12 | 5.03 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 314.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 40 | 316.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 60 | 317.30 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 68 | 317.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 85 | 317.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 129 | 319.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 148 | 319.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 184 | 320.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 223 | 320.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 5 |
| 264 | 321.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 485 | 324.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 510 | 324.36 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 518 | 324.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 558 | 324.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 564 | 324.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 596 | 325.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 606 | 325.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 727 | 326.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 731 | 326.53 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 960 | 328.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 982 | 328.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |