Os12g0148500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0148500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.92 | 0.373 | 12 | -0.789 | 1.76 | -0.533 | -0.81 | 0.272 | -0.399 | 21.9 | 24.6 | 766 | -- | -- |
| 63.04 | 0.37 | 12 | -0.712 | 1.76 | -0.528 | -0.896 | -- | -0.377 | 21.9 | 24.6 | 766 | -- | -- |
| 65.01 | 0.376 | 12 | -0.865 | 1.76 | -0.551 | -- | 0.673 | -0.431 | 21.9 | 24.7 | 766 | -- | -- |
| 66.1 | 0.379 | 12 | -0.675 | 1.77 | -0.513 | -- | -- | -0.367 | 21.9 | 24.67 | 766 | -- | -- |
| 223.82 | 0.697 | 12.1 | -1.35 | -- | -0.964 | -- | 2.03 | -0.855 | -- | 25.5 | 716 | -- | -- |
| 72.75 | 0.4 | 11.9 | -0.536 | 1.98 | -- | -0.858 | -- | -0.172 | 21.9 | -- | -- | -- | -- |
| 75.58 | 0.407 | 11.9 | -0.504 | 1.98 | -- | -- | -- | -0.171 | 21.9 | -- | -- | -- | -- |
| 201.14 | 0.661 | 12 | -0.986 | -- | -1.43 | -- | -- | -0.663 | -- | 25.3 | 763 | -- | -- |
| 77.13 | 0.409 | 11.9 | -- | 1.83 | -0.362 | -- | -- | -0.241 | 21.9 | 24.63 | 765 | -- | -- |
| 310.88 | 0.824 | 11.9 | -0.482 | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
| 82.27 | 0.424 | 11.9 | -- | 1.98 | -- | -- | -- | -0.115 | 21.9 | -- | -- | -- | -- |
| 222.54 | 0.695 | 12 | -- | -- | -1.41 | -- | -- | -0.58 | -- | 25.29 | 749 | -- | -- |
| 317 | 0.831 | 11.9 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 3 | 59.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 9 | 60.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 23 | 60.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 25 | 61.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 26 | 61.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 31 | 61.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 40 | 61.50 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 20 |
| 45 | 61.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 50 | 61.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 67 | 61.88 | temperature | 20 | 30 | > th | dose dependent | sin | 10 | NA |
| 70 | 61.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 141 | 62.30 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 18 |
| 146 | 62.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 202 | 62.53 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 19 | 11 |
| 204 | 62.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 238 | 62.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 274 | 62.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 286 | 62.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 305 | 62.89 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 334 | 62.97 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 21 |
| 345 | 63.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 387 | 63.12 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 11 |
| 404 | 63.16 | atmosphere | 995 | 720 | > th | dose independent | rect. | 9 | 6 |
| 420 | 63.21 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 453 | 63.27 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 4 |
| 494 | 63.38 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 20 |
| 547 | 63.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 555 | 63.47 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 2 |
| 565 | 63.49 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 586 | 63.53 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 22 |
| 619 | 63.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 676 | 63.65 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 684 | 63.67 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 14 |
| 720 | 63.72 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 753 | 63.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 757 | 63.77 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 778 | 63.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 794 | 63.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 810 | 63.83 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 22 |
| 831 | 63.86 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 848 | 63.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 890 | 63.91 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 13 |
| 894 | 63.92 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 898 | 63.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 913 | 63.94 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 934 | 63.96 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 11 |
| 951 | 63.98 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 996 | 64.02 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |