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Os12g0147800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytosulfokines 5 precursor (Secretory protein SH27A) [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine- beta (PSK-beta) (Phytosulfokine-b)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.91 | 0.719 | 9.5 | -0.489 | 0.925 | -2.18 | -0.851 | -2.54 | -0.0705 | 13 | 20.25 | 1967 | -- | -- |
| 238.6 | 0.719 | 9.42 | 0.191 | 0.916 | -2.27 | -0.816 | -- | 0.112 | 13.1 | 21.14 | 1975 | -- | -- |
| 236.73 | 0.717 | 9.5 | -0.501 | 0.952 | -2.17 | -- | -2.45 | -0.0715 | 12.8 | 20.21 | 1915 | -- | -- |
| 241.24 | 0.723 | 9.42 | 0.162 | 0.913 | -2.26 | -- | -- | 0.109 | 12.9 | 21.06 | 1970 | -- | -- |
| 262.29 | 0.754 | 9.47 | -0.253 | -- | -2.53 | -- | -1.41 | 0.0219 | -- | 20.4 | 984 | -- | -- |
| 385.53 | 0.92 | 9.52 | -0.61 | 1.07 | -- | -0.548 | -- | -0.39 | 12.1 | -- | -- | -- | -- |
| 386.78 | 0.921 | 9.52 | -0.633 | 1.07 | -- | -- | -- | -0.393 | 12 | -- | -- | -- | -- |
| 263.13 | 0.755 | 9.43 | 0.148 | -- | -2.6 | -- | -- | 0.119 | -- | 20.75 | 993 | -- | -- |
| 241.81 | 0.724 | 9.42 | -- | 0.919 | -2.2 | -- | -- | 0.0768 | 12.9 | 21.25 | 1968 | -- | -- |
| 459.25 | 1 | 9.55 | -0.666 | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
| 397.33 | 0.932 | 9.51 | -- | 1.08 | -- | -- | -- | -0.323 | 12 | -- | -- | -- | -- |
| 263.59 | 0.756 | 9.43 | -- | -- | -2.54 | -- | -- | 0.0908 | -- | 21.09 | 992 | -- | -- |
| 470.95 | 1.01 | 9.53 | -- | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 3 | 228.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 12 | 229.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 14 | 229.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 18 | 229.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 65 | 232.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 104 | 233.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 201 | 236.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 203 | 236.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 338 | 238.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 373 | 239.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 435 | 239.63 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 442 | 239.66 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 465 | 239.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 541 | 240.42 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 653 | 241.05 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 758 | 241.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 849 | 241.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 881 | 242.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 899 | 242.19 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
