Os12g0147500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase domain containing protein.
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Os12g0147500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.36 | 0.424 | 10 | 0.579 | 1.17 | 0.959 | 1 | 0.703 | 0.303 | 15.1 | 0.05878 | 103 | -- | -- |
| 82.51 | 0.423 | 10 | 0.591 | 1.17 | 0.958 | 0.263 | -- | 0.308 | 15.1 | 0.05913 | 104 | -- | -- |
| 82.82 | 0.424 | 10 | 0.633 | 1.19 | 1 | -- | 0.201 | 0.335 | 15 | 0.0582 | 100 | -- | -- |
| 82.73 | 0.424 | 10 | 0.608 | 1.19 | 0.975 | -- | -- | 0.315 | 15.1 | 0.06 | 110 | -- | -- |
| 107.41 | 0.483 | 10 | 0.475 | -- | -0.625 | -- | -0.057 | 0.169 | -- | 91.38 | 831 | -- | -- |
| 94.44 | 0.456 | 10.1 | 0.541 | 0.705 | -- | 0.402 | -- | 0.242 | 19.6 | -- | -- | -- | -- |
| 94.89 | 0.456 | 10.1 | 0.531 | 0.705 | -- | -- | -- | 0.243 | 19.6 | -- | -- | -- | -- |
| 107.37 | 0.483 | 10 | 0.482 | -- | -0.623 | -- | -- | 0.165 | -- | 97.92 | 820 | -- | -- |
| 92.55 | 0.448 | 10 | -- | 1.11 | 0.927 | -- | -- | 0.246 | 15 | 0.06 | 90 | -- | -- |
| 121.6 | 0.515 | 10 | 0.521 | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
| 102.32 | 0.473 | 10.1 | -- | 0.701 | -- | -- | -- | 0.184 | 19.7 | -- | -- | -- | -- |
| 113.49 | 0.496 | 10.1 | -- | -- | -0.645 | -- | -- | 0.11 | -- | 145.2 | 821 | -- | -- |
| 128.76 | 0.53 | 10 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.69 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 2 | 70.21 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 13 | 70.90 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 31 | 71.84 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 32 | 71.90 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 34 | 72.11 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 35 | 72.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 36 | 72.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 37 | 72.13 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 39 | 72.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 40 | 72.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 41 | 72.22 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 43 | 72.29 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 49 | 72.43 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 51 | 72.45 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 55 | 72.61 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 57 | 72.61 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 63 | 72.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 65 | 72.73 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 66 | 72.73 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 68 | 72.73 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 69 | 72.73 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 70 | 72.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 87 | 73.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 97 | 73.06 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 103 | 73.18 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 130 | 73.47 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 136 | 73.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 158 | 73.59 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 178 | 73.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 179 | 73.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 180 | 73.60 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 182 | 73.63 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 210 | 73.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 211 | 73.79 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 220 | 73.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 221 | 73.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 223 | 73.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 227 | 73.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 228 | 73.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 230 | 73.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 235 | 73.96 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 236 | 73.96 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 239 | 73.98 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 240 | 73.99 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 249 | 74.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 258 | 74.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 274 | 74.21 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 19 |
| 279 | 74.21 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 281 | 74.22 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 337 | 74.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 352 | 74.49 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 17 |
| 354 | 74.49 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 385 | 74.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 392 | 74.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 402 | 74.71 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 419 | 74.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 424 | 74.81 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 442 | 74.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 447 | 74.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 449 | 74.87 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 467 | 74.90 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 492 | 75.00 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 498 | 75.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 501 | 75.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 505 | 75.04 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 5 |
| 506 | 75.04 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 507 | 75.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 509 | 75.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 510 | 75.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 511 | 75.05 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 512 | 75.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 514 | 75.06 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 526 | 75.12 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 546 | 75.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 551 | 75.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 556 | 75.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 557 | 75.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 560 | 75.22 | humidity | 90.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 561 | 75.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 572 | 75.28 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 586 | 75.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 587 | 75.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 588 | 75.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 592 | 75.35 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 642 | 75.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 643 | 75.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 650 | 75.54 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 660 | 75.58 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 676 | 75.62 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 701 | 75.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 706 | 75.69 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 711 | 75.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 712 | 75.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 713 | 75.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 756 | 75.83 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 758 | 75.83 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 775 | 75.87 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 781 | 75.88 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 788 | 75.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 797 | 75.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 801 | 75.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 802 | 75.93 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 813 | 75.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 855 | 76.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 858 | 76.06 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 10 |
| 884 | 76.12 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 18 |
| 892 | 76.14 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 909 | 76.20 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 918 | 76.23 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 945 | 76.30 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 18 |
| 959 | 76.35 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 966 | 76.37 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 973 | 76.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 975 | 76.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 985 | 76.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 10 |
| 991 | 76.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 994 | 76.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |