Os12g0145700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyruvate kinase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0145700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Pyruvate kinase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.06 | 0.399 | 11.7 | -0.999 | 0.971 | 1.2 | 0.242 | 2.21 | -0.0948 | 23.8 | 23.9 | 963 | -- | -- |
| 77.15 | 0.409 | 11.6 | -0.67 | 0.962 | 0.872 | -0.119 | -- | -0.0374 | 23.6 | 24.9 | 894 | -- | -- |
| 72.29 | 0.396 | 11.7 | -0.982 | 0.967 | 1.18 | -- | 2.07 | -0.0918 | 23.7 | 23.9 | 969 | -- | -- |
| 77.19 | 0.409 | 11.6 | -0.682 | 0.966 | 0.912 | -- | -- | -0.0255 | 23.7 | 24.97 | 948 | -- | -- |
| 101.52 | 0.472 | 11.6 | -0.731 | -- | 1.5 | -- | 0.733 | -0.024 | -- | 61.13 | 2 | -- | -- |
| 89.02 | 0.442 | 11.7 | -0.931 | 0.848 | -- | -0.12 | -- | -0.207 | 23.7 | -- | -- | -- | -- |
| 89.08 | 0.442 | 11.7 | -0.926 | 0.849 | -- | -- | -- | -0.206 | 23.7 | -- | -- | -- | -- |
| 101.96 | 0.47 | 11.6 | -0.629 | -- | 1.5 | -- | -- | 0.00486 | -- | 51.25 | 2 | -- | -- |
| 87.19 | 0.435 | 11.6 | -- | 0.993 | 1.21 | -- | -- | 0.109 | 23.7 | 24.9 | 967 | -- | -- |
| 134.4 | 0.542 | 11.6 | -0.902 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 111.7 | 0.494 | 11.6 | -- | 0.838 | -- | -- | -- | -0.103 | 23.7 | -- | -- | -- | -- |
| 111.82 | 0.492 | 11.6 | -- | -- | 1.7 | -- | -- | 0.0971 | -- | 57.75 | 2 | -- | -- |
| 155.85 | 0.583 | 11.6 | -- | -- | -- | -- | -- | -0.0959 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 2 | 71.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 3 | 71.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 20 | 71.71 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 50 | 72.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 60 | 72.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 67 | 72.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 107 | 72.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 111 | 72.69 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 121 | 72.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 130 | 72.83 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 134 | 72.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 141 | 72.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 154 | 72.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 178 | 73.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 211 | 73.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 263 | 73.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 266 | 73.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 269 | 73.60 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 289 | 73.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 303 | 73.73 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 327 | 73.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 332 | 73.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 345 | 73.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 366 | 73.99 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 389 | 74.06 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 393 | 74.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 400 | 74.10 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 21 |
| 419 | 74.15 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 441 | 74.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 451 | 74.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 475 | 74.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 483 | 74.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 484 | 74.33 | wind | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 553 | 74.47 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 597 | 74.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 639 | 74.57 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 662 | 74.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 772 | 74.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 774 | 74.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 813 | 74.81 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 832 | 74.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 838 | 74.85 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 18 |
| 842 | 74.86 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 862 | 74.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 869 | 74.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 882 | 74.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 891 | 74.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 919 | 74.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 976 | 75.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 993 | 75.02 | wind | 1 | 4320 | > th | dose independent | rect. | 7 | 1 |