Os12g0145200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein MONOCULM 1.
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Os12g0145200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein MONOCULM 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.56 | 0.565 | 5.68 | 1.22 | 0.534 | -1.41 | 0.174 | 2.12 | 0.325 | 16.8 | 23.75 | 4181 | -- | -- |
| 146.47 | 0.564 | 5.73 | 0.695 | 0.542 | -1.24 | 0.0821 | -- | 0.272 | 16.5 | 22.39 | 4192 | -- | -- |
| 144.63 | 0.56 | 5.68 | 1.22 | 0.534 | -1.41 | -- | 2.09 | 0.326 | 16.7 | 23.74 | 4191 | -- | -- |
| 146.42 | 0.564 | 5.73 | 0.69 | 0.534 | -1.22 | -- | -- | 0.245 | 16.6 | 22.8 | 4210 | -- | -- |
| 159.56 | 0.588 | 5.67 | 1.2 | -- | -1.45 | -- | 1.91 | 0.344 | -- | 23.27 | 4143 | -- | -- |
| 191.01 | 0.648 | 5.77 | 0.227 | 0.622 | -- | 0.108 | -- | 0.0671 | 16.1 | -- | -- | -- | -- |
| 191.04 | 0.647 | 5.77 | 0.228 | 0.622 | -- | -- | -- | 0.0677 | 16.1 | -- | -- | -- | -- |
| 161.24 | 0.591 | 5.73 | 0.693 | -- | -1.29 | -- | -- | 0.24 | -- | 22.81 | 4143 | -- | -- |
| 156.32 | 0.582 | 5.78 | -- | 0.532 | -1.04 | -- | -- | 0.0402 | 16.5 | 25.48 | 4212 | -- | -- |
| 212.06 | 0.68 | 5.77 | 0.203 | -- | -- | -- | -- | 0.0512 | -- | -- | -- | -- | -- |
| 192.41 | 0.649 | 5.78 | -- | 0.618 | -- | -- | -- | 0.0423 | 16.1 | -- | -- | -- | -- |
| 171.7 | 0.61 | 5.78 | -- | -- | -1.13 | -- | -- | 0.0216 | -- | 25.4 | 4145 | -- | -- |
| 213.15 | 0.681 | 5.78 | -- | -- | -- | -- | -- | 0.0287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 2 | 142.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 3 | 142.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 10 | 142.81 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 11 | 142.83 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 28 | 143.72 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 32 | 143.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 33 | 143.87 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 38 | 144.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 144.06 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 41 | 144.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 46 | 144.31 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 51 | 144.34 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 54 | 144.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 58 | 144.40 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 61 | 144.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 70 | 144.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 73 | 144.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 90 | 145.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 92 | 145.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 99 | 145.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 100 | 145.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 112 | 145.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 122 | 145.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 129 | 145.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 22 |
| 130 | 145.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 154 | 145.44 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 211 | 145.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 231 | 145.61 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 245 | 145.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 256 | 145.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 269 | 145.72 | temperature | 25 | 4320 | > th | dose dependent | sin | 18 | NA |
| 277 | 145.73 | temperature | 25 | 4320 | > th | dose dependent | sin | 3 | NA |
| 291 | 145.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 15 |
| 292 | 145.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 296 | 145.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 324 | 145.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 4 |
| 325 | 145.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 386 | 145.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 528 | 146.20 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 534 | 146.21 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 535 | 146.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 556 | 146.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 562 | 146.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 590 | 146.32 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 777 | 146.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 792 | 146.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 803 | 146.68 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 836 | 146.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 869 | 146.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 913 | 146.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 19 |
| 924 | 146.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 943 | 146.90 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 952 | 146.91 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 963 | 146.92 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 18 |