Os12g0143900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3).
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Os12g0143900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.4 | 0.432 | 10.6 | -0.815 | 0.965 | -1.15 | -1.54 | -1.31 | -0.103 | 23.8 | 22.63 | 777 | -- | -- |
| 86.22 | 0.432 | 10.6 | -0.959 | 0.98 | -0.914 | -1.29 | -- | -0.13 | 23.8 | 22.8 | 770 | -- | -- |
| 93.41 | 0.45 | 10.6 | -0.871 | 0.978 | -1.07 | -- | -0.42 | -0.126 | 23.7 | 22.48 | 770 | -- | -- |
| 93.49 | 0.45 | 10.6 | -0.914 | 0.984 | -0.962 | -- | -- | -0.123 | 23.7 | 22.52 | 780 | -- | -- |
| 150.05 | 0.571 | 10.6 | -0.949 | -- | -1.31 | -- | -0.298 | -0.242 | -- | 25.7 | 830 | -- | -- |
| 96.27 | 0.46 | 10.6 | -0.721 | 1.07 | -- | -1.36 | -- | 0.0111 | 23.7 | -- | -- | -- | -- |
| 104.27 | 0.478 | 10.6 | -0.665 | 1.08 | -- | -- | -- | 0.0174 | 23.6 | -- | -- | -- | -- |
| 150.19 | 0.571 | 10.6 | -1.01 | -- | -1.3 | -- | -- | -0.255 | -- | 25.71 | 829 | -- | -- |
| 112.56 | 0.494 | 10.6 | -- | 1.02 | -0.48 | -- | -- | 0.0348 | 23.6 | 22.9 | 748 | -- | -- |
| 177.55 | 0.623 | 10.6 | -0.635 | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
| 115.93 | 0.504 | 10.6 | -- | 1.07 | -- | -- | -- | 0.0915 | 23.6 | -- | -- | -- | -- |
| 171.97 | 0.613 | 10.5 | -- | -- | 0.906 | -- | -- | 0.266 | -- | 25.8 | 812 | -- | -- |
| 188.19 | 0.64 | 10.6 | -- | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 2 | 74.09 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 3 | 74.10 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 5 | 74.35 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 7 | 74.52 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 11 | 74.76 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 39 | 75.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 44 | 75.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 67 | 76.37 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 93 | 76.85 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 112 | 77.13 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 141 | 77.59 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 218 | 78.57 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 1 |
| 220 | 78.60 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 223 | 78.61 | temperature | 25.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 297 | 79.30 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 303 | 79.34 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 323 | 79.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 385 | 80.01 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 395 | 80.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 419 | 80.31 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 424 | 80.36 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 439 | 80.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 455 | 80.60 | temperature | 20.0 | 720 | > th | dose independent | sin | 6 | NA |
| 473 | 80.73 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 485 | 80.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 488 | 80.80 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 554 | 81.18 | temperature | 15.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 614 | 81.47 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 624 | 81.54 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 659 | 81.73 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 678 | 81.81 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 689 | 81.84 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 712 | 81.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 715 | 81.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 719 | 82.00 | radiation | 10.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 734 | 82.05 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 21 |
| 741 | 82.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 744 | 82.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 746 | 82.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 774 | 82.17 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 775 | 82.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 794 | 82.25 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 825 | 82.36 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 830 | 82.39 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 832 | 82.39 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 7 |
| 834 | 82.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 837 | 82.41 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 838 | 82.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 3 |
| 839 | 82.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 840 | 82.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 861 | 82.47 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 866 | 82.51 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 21 |
| 867 | 82.51 | humidity | 90.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 869 | 82.51 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 871 | 82.52 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 877 | 82.53 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 12 |
| 882 | 82.55 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 886 | 82.55 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 891 | 82.57 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 3 |
| 909 | 82.65 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 910 | 82.65 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 919 | 82.67 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 16 |
| 944 | 82.74 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 23 |
| 948 | 82.75 | humidity | 70.0 | 30 | < th | dose independent | rect. | 11 | 1 |
| 952 | 82.75 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 14 |
| 964 | 82.81 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 21 |
| 968 | 82.82 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 998 | 82.90 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 8 |