Os12g0141400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0141400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.35 | 0.439 | 7.64 | 0.127 | 1.1 | -1.29 | 0.478 | -3.18 | -0.0497 | 19.2 | 0.7828 | 4328 | -- | -- |
| 85.6 | 0.431 | 7.74 | -0.436 | 0.885 | -1.08 | 0.218 | -- | -0.264 | 19.1 | 4.098 | 12461 | -- | -- |
| 87.87 | 0.437 | 7.64 | 0.12 | 1.09 | -1.28 | -- | -3.17 | -0.0501 | 19.1 | 0.7967 | 4306 | -- | -- |
| 85.7 | 0.431 | 7.74 | -0.495 | 0.895 | -1.12 | -- | -- | -0.282 | 18.9 | 3.817 | 12542 | -- | -- |
| 101.32 | 0.469 | 7.69 | -0.256 | -- | -1.85 | -- | -1.88 | -0.236 | -- | 2.093 | 6601 | -- | -- |
| 104.31 | 0.479 | 7.68 | -0.206 | 1.09 | -- | 0.456 | -- | 0.00289 | 19.3 | -- | -- | -- | -- |
| 104.87 | 0.48 | 7.68 | -0.216 | 1.09 | -- | -- | -- | 0.00401 | 19.3 | -- | -- | -- | -- |
| 105.51 | 0.478 | 7.73 | -0.387 | -- | -1.74 | -- | -- | -0.254 | -- | 2.952 | 5190 | -- | -- |
| 90.87 | 0.444 | 7.73 | -- | 0.865 | -0.929 | -- | -- | -0.229 | 18.9 | 5.668 | 11089 | -- | -- |
| 167.82 | 0.605 | 7.66 | -0.235 | -- | -- | -- | -- | -0.0145 | -- | -- | -- | -- | -- |
| 106.09 | 0.482 | 7.68 | -- | 1.09 | -- | -- | -- | 0.028 | 19.3 | -- | -- | -- | -- |
| 111.04 | 0.491 | 7.72 | -- | -- | -1.79 | -- | -- | -0.23 | -- | 4.098 | 5185 | -- | -- |
| 169.27 | 0.607 | 7.65 | -- | -- | -- | -- | -- | 0.0116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.60 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 18 |
| 7 | 80.39 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 8 | 80.52 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 11 |
| 17 | 81.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 24 | 81.29 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 28 | 81.35 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 29 | 81.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 49 | 82.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 53 | 82.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 54 | 82.23 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 12 |
| 56 | 82.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 58 | 82.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 71 | 82.46 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 74 | 82.51 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 80 | 82.60 | humidity | 70.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 101 | 83.03 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 104 | 83.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 106 | 83.08 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 121 | 83.24 | wind | 7.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 132 | 83.38 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 135 | 83.40 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 149 | 83.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 152 | 83.49 | humidity | 90.0 | 30 | > th | dose independent | sin | 4 | NA |
| 153 | 83.49 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 154 | 83.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 155 | 83.49 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 164 | 83.54 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 170 | 83.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 184 | 83.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 193 | 83.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 198 | 83.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 202 | 83.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 296 | 83.71 | radiation | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 314 | 83.73 | radiation | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 317 | 83.73 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 376 | 83.82 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 445 | 83.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 451 | 84.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 9 |
| 461 | 84.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 476 | 84.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 481 | 84.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 10 |
| 486 | 84.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 489 | 84.06 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 515 | 84.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 573 | 84.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 593 | 84.22 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 596 | 84.23 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 601 | 84.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 615 | 84.25 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 636 | 84.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 649 | 84.32 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 668 | 84.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 703 | 84.42 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 746 | 84.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 761 | 84.51 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 775 | 84.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 786 | 84.55 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 787 | 84.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 796 | 84.56 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 797 | 84.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 814 | 84.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 820 | 84.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 827 | 84.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 847 | 84.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 855 | 84.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 887 | 84.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 901 | 84.65 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 902 | 84.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 913 | 84.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 968 | 84.67 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 970 | 84.67 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 985 | 84.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 988 | 84.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |