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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0141100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphatidylinositol-4-phosphate 5-kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0325) R2 : 0.000425
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0302 (0.0685) R2dN8 : 0.000549 R2N8 : 0.000425
σ : 0.613
deviance : 172.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.03 0.593 2.99 0.451 0.132 1.83 -0.774 2.58 0.171 4.44 19.87 4179 -- --
161.35 0.592 2.91 0.566 0.102 0.927 -0.721 -- 0.243 3.61 22.6 5819 -- --
160.65 0.59 2.99 0.452 0.131 1.83 -- 2.64 0.172 4.5 19.9 4172 -- --
162.77 0.594 2.91 0.583 0.116 0.924 -- -- 0.237 5.02 22.24 5862 -- --
161.49 0.592 2.99 0.444 -- 1.83 -- 2.67 0.172 -- 19.86 4198 -- --
170.08 0.611 2.96 0.0957 0.0978 -- -0.744 -- 0.0354 4.41 -- -- -- --
171.55 0.613 2.96 0.102 0.0983 -- -- -- 0.0395 5.41 -- -- -- --
163.35 0.595 2.91 0.576 -- 0.91 -- -- 0.236 -- 22.28 5955 -- --
167.37 0.603 2.94 -- 0.122 0.433 -- -- 0.11 5.64 24.78 4179 -- --
172.05 0.613 2.96 0.105 -- -- -- -- 0.0419 -- -- -- -- --
171.82 0.613 2.96 -- 0.1 -- -- -- 0.0281 5.37 -- -- -- --
166.88 0.602 2.94 -- -- 0.595 -- -- 0.131 -- 24.56 1471 -- --
172.34 0.613 2.96 -- -- -- -- -- 0.0302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.77 humidity 90.0 90 < th dose dependent rect. 2 1
7 153.25 humidity 60.0 90 < th dose dependent rect. 9 1
22 153.31 humidity 90.0 10 < th dose independent rect. 3 1
24 153.65 humidity 60.0 90 < th dose independent rect. 8 2
41 153.91 humidity 80.0 90 < th dose independent rect. 2 2
71 154.97 radiation 1.0 43200 < th dose dependent rect. 3 1
74 156.07 wind 9.0 30 < th dose independent rect. 3 23
81 156.94 temperature 20.0 4320 < th dose dependent rect. 1 1
84 157.23 humidity 90.0 30 > th dose independent rect. 2 1
85 157.23 humidity 80.0 30 > th dose dependent rect. 2 1
86 157.24 wind 3.0 30 < th dose dependent rect. 2 1
90 157.29 wind 3.0 30 < th dose independent rect. 2 1
91 157.29 temperature 15.0 30 > th dose dependent rect. 2 1
96 157.32 atmosphere 1005.0 30 > th dose dependent rect. 2 1
104 157.39 temperature 10.0 30 > th dose independent rect. 2 1
106 157.39 temperature 30.0 30 < th dose independent rect. 2 1
107 157.39 humidity 50.0 30 > th dose independent rect. 2 1
110 157.39 atmosphere 995.0 30 > th dose independent rect. 2 1
111 157.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
113 157.39 radiation 1.0 30 < th dose independent rect. 2 1
118 157.39 precipitation 0.1 30 < th dose independent rect. 2 1
119 157.39 temperature 10.0 30 > th dose independent rect. 3 23
120 157.39 radiation 1.0 30 < th dose dependent rect. 2 1
125 157.39 precipitation 0.1 30 < th dose dependent rect. 2 1
133 157.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
141 157.74 temperature 20.0 90 < th dose dependent rect. 2 1
144 157.86 temperature 30.0 30 < th dose dependent rect. 2 1
181 158.33 temperature 10.0 720 > th dose dependent rect. 10 5
183 158.34 wind 1.0 30 > th dose independent rect. 2 1
220 158.58 temperature 20.0 4320 < th dose dependent sin 9 NA
274 158.70 temperature 20.0 4320 < th dose dependent rect. 5 1
351 158.82 wind 3.0 43200 > th dose independent rect. 1 1
451 159.07 wind 9.0 1440 < th dose independent rect. 3 1
452 159.07 temperature 10.0 1440 > th dose independent rect. 3 1
455 159.07 temperature 30.0 1440 < th dose independent rect. 3 1
459 159.07 humidity 50.0 1440 > th dose independent rect. 3 1
468 159.07 atmosphere 995.0 1440 > th dose independent rect. 3 1
469 159.07 radiation 1.0 1440 < th dose independent rect. 3 1
489 159.07 temperature 10.0 1440 > th dose independent rect. 4 23
492 159.07 radiation 1.0 1440 < th dose dependent rect. 3 1
527 159.13 temperature 20.0 4320 < th dose dependent no NA NA
542 159.24 temperature 20.0 4320 < th dose dependent rect. 5 23
559 159.40 temperature 20.0 4320 > th dose independent rect. 22 3
561 159.42 temperature 20.0 4320 < th dose independent rect. 22 4
573 159.50 wind 3.0 14400 < th dose independent rect. 6 1
580 159.54 temperature 20.0 4320 < th dose independent rect. 1 1
581 159.55 wind 3.0 14400 > th dose independent rect. 6 1
587 159.57 wind 1.0 10 < th dose independent rect. 2 8
595 159.59 wind 1.0 10 < th dose independent rect. 2 11
612 159.68 wind 3.0 43200 < th dose independent rect. 1 1
613 159.70 temperature 30.0 720 < th dose dependent rect. 8 11
616 159.72 wind 3.0 10 > th dose dependent rect. 3 1
621 159.73 atmosphere 1015.0 4320 > th dose dependent rect. 9 17
622 159.74 atmosphere 1015.0 14400 < th dose independent rect. 12 1
635 159.79 atmosphere 1015.0 4320 > th dose dependent sin 19 NA
643 159.80 temperature 10.0 30 > th dose dependent rect. 3 23
644 159.81 atmosphere 1015.0 14400 > th dose independent rect. 12 1
647 159.81 temperature 20.0 4320 < th dose independent rect. 12 16
650 159.82 wind 1.0 14400 > th dose dependent rect. 6 1
654 159.83 wind 7.0 14400 < th dose dependent rect. 6 1
657 159.84 atmosphere 995.0 30 > th dose independent rect. 3 23
711 159.96 atmosphere 1015.0 14400 < th dose independent rect. 12 9
721 159.97 atmosphere 1015.0 14400 > th dose dependent rect. 11 1
727 159.98 humidity 60.0 14400 < th dose dependent rect. 8 1
799 160.09 atmosphere 1015.0 14400 > th dose independent rect. 12 10
806 160.10 atmosphere 1015.0 4320 > th dose dependent rect. 11 10
839 160.14 temperature 20.0 4320 > th dose independent rect. 12 16
842 160.14 temperature 10.0 4320 > th dose dependent rect. 3 1
861 160.17 atmosphere 1015.0 14400 < th dose independent rect. 17 4
864 160.17 temperature 20.0 4320 < th dose independent rect. 22 19
865 160.17 atmosphere 1015.0 4320 > th dose dependent rect. 23 3
900 160.21 temperature 20.0 4320 > th dose independent rect. 12 19
907 160.22 temperature 20.0 4320 < th dose independent sin 14 NA
921 160.23 humidity 60.0 14400 < th dose independent rect. 8 1
932 160.23 atmosphere 1010.0 4320 > th dose dependent rect. 22 1
989 160.26 atmosphere 1015.0 4320 > th dose dependent rect. 11 21
997 160.27 temperature 20.0 4320 > th dose independent rect. 22 19