Os12g0141000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0141000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 408.04 | 0.949 | 3.45 | 1.19 | 0.134 | -0.906 | -1.37 | -1.45 | 0.386 | 10.7 | 55.78 | 1843 | -- | -- |
| 410.52 | 0.944 | 3.43 | 1.31 | 0.0891 | -1.19 | -1.46 | -- | 0.369 | 10.6 | 53 | 1812 | -- | -- |
| 415.71 | 0.95 | 3.45 | 1.14 | 0.163 | -0.899 | -- | -1.29 | 0.384 | 11.8 | 56 | 1843 | -- | -- |
| 417.73 | 0.952 | 3.43 | 1.25 | 0.134 | -1.21 | -- | -- | 0.381 | 10.9 | 53.01 | 1812 | -- | -- |
| 417.1 | 0.951 | 3.46 | 1.14 | -- | -0.914 | -- | -1.33 | 0.381 | -- | 56 | 1843 | -- | -- |
| 448.97 | 0.993 | 3.38 | 1.01 | 0.224 | -- | -1.16 | -- | 0.596 | 10.9 | -- | -- | -- | -- |
| 454.62 | 0.998 | 3.38 | 0.965 | 0.23 | -- | -- | -- | 0.592 | 11.4 | -- | -- | -- | -- |
| 418.77 | 0.953 | 3.43 | 1.24 | -- | -1.23 | -- | -- | 0.385 | -- | 53.36 | 1812 | -- | -- |
| 455.01 | 0.993 | 3.46 | -- | 0.125 | -0.815 | -- | -- | 0.306 | 10.9 | 56 | 1795 | -- | -- |
| 457.93 | 1 | 3.39 | 0.959 | -- | -- | -- | -- | 0.59 | -- | -- | -- | -- | -- |
| 479.16 | 1.02 | 3.4 | -- | 0.22 | -- | -- | -- | 0.485 | 11.1 | -- | -- | -- | -- |
| 456.38 | 0.995 | 3.46 | -- | -- | -0.833 | -- | -- | 0.278 | -- | 55.65 | 1834 | -- | -- |
| 482.18 | 1.02 | 3.41 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 407.77 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 2 | 408.08 | humidity | 70 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 19 | 408.38 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 20 | 408.41 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 54 | 408.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 62 | 408.96 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 63 | 408.96 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 64 | 408.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 67 | 408.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 107 | 409.37 | humidity | 60 | 1440 | > th | dose independent | sin | 14 | NA |
| 127 | 409.68 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 8 |
| 163 | 409.90 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 212 | 410.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 8 |
| 221 | 410.26 | humidity | 60 | 1440 | < th | dose independent | sin | 15 | NA |
| 224 | 410.30 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 297 | 410.61 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 327 | 410.77 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 397 | 411.11 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 462 | 411.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 598 | 411.96 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 673 | 412.38 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 861 | 413.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 966 | 413.58 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |