Os12g0140600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os12g0140600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.55 | 0.28 | 8.86 | 0.421 | 0.835 | 0.834 | 0.0116 | -0.5 | 0.0759 | 15.9 | 20.66 | 258 | -- | -- |
| 35.69 | 0.278 | 8.85 | 0.513 | 0.852 | 0.811 | -0.116 | -- | 0.103 | 15.8 | 19.71 | 293 | -- | -- |
| 35.55 | 0.278 | 8.86 | 0.423 | 0.835 | 0.833 | -- | -0.49 | 0.0763 | 15.9 | 20.66 | 259 | -- | -- |
| 35.71 | 0.278 | 8.85 | 0.509 | 0.848 | 0.81 | -- | -- | 0.101 | 15.9 | 19.76 | 268 | -- | -- |
| 56.42 | 0.35 | 8.89 | 0.088 | -- | 1.65 | -- | -1.83 | -0.0422 | -- | 24.1 | 150 | -- | -- |
| 46.68 | 0.32 | 8.82 | 0.697 | 1.15 | -- | 0.0979 | -- | 0.24 | 16.1 | -- | -- | -- | -- |
| 46.71 | 0.32 | 8.82 | 0.698 | 1.15 | -- | -- | -- | 0.241 | 16.1 | -- | -- | -- | -- |
| 57.97 | 0.355 | 8.85 | 0.412 | -- | 1.52 | -- | -- | 0.0559 | -- | 24.1 | 145 | -- | -- |
| 41.76 | 0.301 | 8.86 | -- | 0.849 | 1.02 | -- | -- | 0.0153 | 15.4 | 18 | 422 | -- | -- |
| 118.78 | 0.509 | 8.81 | 0.652 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 59.56 | 0.361 | 8.84 | -- | 1.14 | -- | -- | -- | 0.163 | 16.1 | -- | -- | -- | -- |
| 62.3 | 0.368 | 8.86 | -- | -- | 1.57 | -- | -- | 0.00154 | -- | 24.02 | 148 | -- | -- |
| 129.98 | 0.532 | 8.83 | -- | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 9 | 33.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 10 | 33.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 12 | 33.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 19 | 34.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 55 | 34.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 77 | 34.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 85 | 35.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 106 | 35.21 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 112 | 35.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 119 | 35.30 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 133 | 35.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 150 | 35.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 165 | 35.59 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 170 | 35.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 173 | 35.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 182 | 35.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 197 | 35.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 217 | 35.78 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 269 | 35.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 349 | 36.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 359 | 36.19 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 424 | 36.34 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 499 | 36.50 | temperature | 25 | 30 | > th | dose dependent | sin | 20 | NA |
| 501 | 36.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 601 | 36.64 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 607 | 36.65 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 12 |
| 618 | 36.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 729 | 36.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 780 | 36.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 823 | 36.88 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 22 |
| 874 | 36.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 911 | 36.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 11 |
| 977 | 37.02 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 17 |
| 996 | 37.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 14 |