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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0138600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0404) R2 : 0.16
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.9 (0.438) R2dE : 0.147 R2E : 0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.182 (0.0852) R2dN8 : 0.0109 R2N8 : 0.0128
σ : 0.759
deviance : 265.67
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.224
memory length : 247
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14
open length of G : 0.565

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.62 0.764 2.9 0.136 0.087 2.91 -0.0508 3.84 -0.174 0.374 1.2 251 14 0.561
264.84 0.758 2.91 0.105 0.0891 3.89 -0.0509 -- -0.171 0.674 1.207 249 14 0.583
264.63 0.758 2.9 0.137 0.0873 2.92 -- 3.84 -0.174 0.509 1.2 249 14 0.561
264.85 0.758 2.91 0.106 0.0894 3.9 -- -- -0.171 0.766 1.208 249 14 0.583
265.1 0.758 2.9 0.142 -- 2.87 -- 3.97 -0.172 -- 1.203 249 14 0.562
308.39 0.823 2.92 0.243 0.145 -- 0.602 -- -0.203 18.2 -- -- -- --
309.14 0.823 2.92 0.235 0.155 -- -- -- -0.201 19.5 -- -- -- --
265.35 0.759 2.91 0.11 -- 3.87 -- -- -0.17 -- 1.218 244 14 0.565
265.15 0.758 2.91 -- 0.092 3.93 -- -- -0.182 0.896 1.2 244 14 0.577
310.42 0.823 2.92 0.232 -- -- -- -- -0.204 -- -- -- -- --
310.59 0.824 2.93 -- 0.153 -- -- -- -0.227 19.6 -- -- -- --
265.67 0.759 2.91 -- -- 3.9 -- -- -0.182 -- 1.224 247 14 0.565
311.84 0.824 2.92 -- -- -- -- -- -0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.76 wind 1e+00 270 < th dose independent rect. 14 1
2 275.65 wind 1e+00 10 < th dose dependent rect. 6 1
3 279.78 wind 1e+00 270 < th dose dependent rect. 14 1
4 279.95 precipitation 1e-01 10 > th dose independent rect. 17 1
32 279.95 precipitation 1e-01 10 > th dose dependent rect. 17 1
88 283.48 radiation 4e+01 270 > th dose independent rect. 15 1
105 283.48 radiation 4e+01 270 > th dose dependent rect. 15 1
122 283.61 radiation 1e+00 30 < th dose dependent rect. 5 13
151 284.37 precipitation 1e-01 10 > th dose independent rect. 17 7
171 284.37 precipitation 1e-01 10 > th dose dependent rect. 17 7
198 284.43 radiation 1e+00 30 < th dose independent rect. 5 13
277 284.75 atmosphere 1e+03 90 < th dose independent rect. 16 1
290 285.50 atmosphere 1e+03 90 < th dose dependent rect. 16 1
293 285.64 precipitation 1e-01 90 > th dose dependent rect. 17 7
299 285.68 precipitation 1e-01 10 < th dose independent sin 20 NA
300 285.68 precipitation 1e-01 10 < th dose dependent sin 20 NA
309 285.70 precipitation 1e-01 10 > th dose independent sin 20 NA
310 285.70 precipitation 1e-01 10 > th dose dependent sin 20 NA
341 286.07 precipitation 1e-01 90 > th dose dependent sin 19 NA
346 286.18 wind 1e+00 10 < th dose independent rect. 6 1
375 286.63 atmosphere 1e+03 10 < th dose independent rect. 3 1
382 286.63 atmosphere 1e+03 10 < th dose dependent rect. 3 1
483 288.16 humidity 8e+01 30 > th dose independent rect. 16 2
500 288.39 radiation 4e+01 4320 > th dose independent rect. 15 1
519 288.47 radiation 1e+00 10 < th dose independent rect. 5 1
538 288.57 wind 1e+00 1440 > th dose independent rect. 13 3
547 288.91 wind 1e+00 1440 < th dose independent rect. 13 3
557 289.09 wind 1e+00 1440 < th dose dependent rect. 13 3
590 289.74 atmosphere 1e+03 270 < th dose dependent rect. 14 1
592 289.82 radiation 1e+00 30 < th dose dependent rect. 5 1
612 290.21 atmosphere 1e+03 90 < th dose dependent rect. 16 5
622 290.37 radiation 1e+00 90 < th dose independent rect. 17 1
623 290.40 atmosphere 1e+03 270 < th dose independent rect. 14 1
675 290.74 humidity 7e+01 30 > th dose dependent rect. 16 2
676 290.77 precipitation 1e-01 90 > th dose independent rect. 17 8
719 291.20 precipitation 1e-01 90 < th dose independent sin 19 NA
720 291.20 precipitation 1e-01 90 < th dose dependent sin 19 NA
736 291.31 wind 1e+00 1440 < th dose independent rect. 12 7
740 291.41 wind 1e+00 1440 > th dose independent rect. 12 7
755 291.46 precipitation 1e-01 90 > th dose dependent rect. 20 23
760 291.48 atmosphere 1e+03 270 < th dose dependent rect. 14 5
779 291.60 radiation 1e+00 90 < th dose dependent rect. 17 1
780 291.61 precipitation 1e-01 90 > th dose independent sin 19 NA
866 292.18 wind 1e+00 270 < th dose independent rect. 12 19
902 292.32 precipitation 1e-01 1440 > th dose independent rect. 21 4
903 292.32 precipitation 1e-01 90 > th dose dependent no NA NA
904 292.32 precipitation 1e-01 1440 > th dose dependent rect. 21 4
956 292.51 precipitation 1e-01 1440 > th dose independent rect. 8 1
957 292.51 precipitation 1e-01 1440 > th dose dependent rect. 8 1