Os12g0137900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0137900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sulfotransferase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.76	(0.0552)	R²	:	0.206
β₁	:	-1.85	(0.203)	R²_dD	:	0.152	R²_D	:	0.0995
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.11	(0.169)	R²_dE	:	0.0797	R²_E	:	0.0547
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.3	(0.119)	R²_dN8	:	0.0152	R²_N8	:	0.00688
σ	:	1.03
deviance	:	488.33
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	29.9
memory length	:	768
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	17.9
open length of G	:	3.39

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
462.24	1.01	2.69	8.17	0.438	-9.73	-1.68	102	-0.276	17	30.2	780	18	3.21
517.95	1.07	3.78	-1.71	0.047	0.686	-2.59	--	-0.408	17.6	30.2	780	18	3.21
468.4	1.01	2.69	8.2	0.453	-9.71	--	103	-0.275	16	30.19	790	18	2.66
482.57	1.02	3.76	-1.89	0.282	1.23	--	--	-0.242	14.9	29.69	716	18	2.09
478.66	1.02	2.75	7.62	--	-9.07	--	95.5	-0.302	--	30.24	789	17.9	14.6
518.91	1.07	3.79	-1.7	0.0681	--	-2.55	--	-0.413	17.6	--	--	--	--
534.46	1.08	3.79	-1.68	0.099	--	--	--	-0.423	13.7	--	--	--	--
488.33	1.03	3.76	-1.85	--	1.11	--	--	-0.3	--	29.9	768	17.9	3.39
570.73	1.11	3.71	--	0.346	1.05	--	--	-0.106	14.7	30.18	707	18.2	2.46
535.05	1.08	3.79	-1.69	--	--	--	--	-0.425	--	--	--	--	--
609.23	1.15	3.75	--	0.13	--	--	--	-0.235	14.1	--	--	--	--
576.88	1.12	3.72	--	--	0.926	--	--	-0.122	--	29.93	719	17.9	3.84
610.25	1.15	3.75	--	--	--	--	--	-0.238	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	463.43	temperature	30	720	> th	dose dependent	rect.	18	1
30	467.69	humidity	50	1440	< th	dose independent	rect.	16	1
31	467.93	humidity	50	1440	< th	dose dependent	rect.	16	1
33	470.74	humidity	50	1440	> th	dose independent	rect.	16	1
34	470.74	humidity	70	720	> th	dose independent	rect.	18	9
35	471.05	humidity	70	720	< th	dose dependent	rect.	18	15
37	471.90	humidity	60	720	< th	dose independent	rect.	18	15
38	471.98	humidity	70	1440	< th	dose dependent	rect.	17	2
39	472.02	temperature	30	720	> th	dose independent	rect.	18	1
68	472.67	wind	1	90	< th	dose dependent	rect.	4	1
74	473.06	wind	1	90	< th	dose independent	rect.	4	1
109	474.37	humidity	60	720	< th	dose independent	rect.	18	2
136	474.45	humidity	60	1440	> th	dose independent	rect.	16	17
152	474.66	humidity	60	1440	> th	dose independent	rect.	16	3
169	474.96	humidity	60	1440	> th	dose independent	rect.	16	13
171	475.00	humidity	60	1440	> th	dose independent	rect.	16	15
173	475.02	humidity	60	1440	> th	dose independent	rect.	16	9
192	475.16	humidity	60	1440	> th	dose independent	rect.	16	6
216	475.66	temperature	30	1440	< th	dose independent	rect.	18	14
252	475.88	temperature	30	1440	< th	dose independent	rect.	18	1
279	476.18	temperature	30	1440	< th	dose independent	rect.	18	5
281	476.20	humidity	60	1440	< th	dose dependent	sin	11	NA
314	476.40	temperature	30	1440	< th	dose independent	rect.	18	11
316	476.45	humidity	60	1440	< th	dose independent	sin	11	NA
344	476.54	humidity	60	1440	> th	dose independent	sin	12	NA
345	476.54	temperature	30	1440	< th	dose independent	rect.	18	9
426	477.42	temperature	25	720	> th	dose dependent	rect.	21	1
774	481.28	radiation	30	4320	< th	dose independent	rect.	21	11
777	481.30	radiation	30	4320	> th	dose independent	rect.	16	16
792	481.40	radiation	30	4320	< th	dose independent	rect.	19	13
826	481.65	radiation	30	4320	< th	dose independent	rect.	6	2
841	481.83	radiation	30	4320	< th	dose independent	rect.	17	15
843	481.84	radiation	1	1440	> th	dose independent	rect.	18	1
856	481.86	radiation	1	1440	< th	dose independent	rect.	18	10
894	481.94	humidity	50	1440	> th	dose dependent	rect.	17	2
900	482.03	radiation	1	1440	< th	dose independent	rect.	18	7
939	482.34	atmosphere	1005	10	> th	dose independent	rect.	4	5
942	482.38	radiation	30	4320	< th	dose independent	rect.	2	6
963	482.46	radiation	1	1440	< th	dose independent	rect.	18	2
976	482.49	atmosphere	1005	10	> th	dose independent	rect.	4	3